Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1084 ATGAACAAAGGAGGGACACCTTTCTTCTTCTCTAACTTCCCCTTTGATCTCAAAGAATCAAATTTGTGGAAAAAATTTCGAAGATGGGGAAGGGTGAGTGATGTTTTCACATCTAATAGATTAAACATTAAGAAGCAAAGGTTTAAATTTGTTAGATTTCAGGGAGTACAAAATGTTAGGGAGTTGGAAAATCATCTGAACACAATATGCATTGAGAGCTGGAAACTGAATGCTAATAGACCGAAATACAACAGGGCAGCAGAAACAAGAAAGGAGTGGAATGTCAAGCTGAAAGAGAAGGCAATAGAGTCAGAGAAAGAGGTTAAAAAAGTGTGGAGGGAAAAAGGAATAAACACGTACGTAAACACTGTAAAGTATGGTAACAGAAACACAACACAATCACAATCACACAACAGGGAAAGTTTGCATGCTATTCACTTTAGAGCAGAAGAAACTCCCAAAGAATGGTTAAAAAAATGTTATATTGGGAGAGTCTCGAATTTAAGCAAAGTACCATGCTTGAACAAAAGCTTTATTTCGGGTGGCCTCAACAATATAAAGGTTAAATTTCTAGGGGGATTCCATTTGTTATTGAAGGGGGAAAATGAAACAAAGATCAAAGAAGCCATAGAGGAGAATAAGAATGGTTTGAAGAAATGTTTGACACAATCATTCCATGGGAAGAGCAATTTGGGCCTACCATTGAAGTTATGGAATATAGATTGTTTCAAACACATTGCAATGTTACTAGGAACCCTTATTGAGGTTGATGAAGCAACTTTGGCATTGGAAGAGCTTGAGTACGCAAGGTTTAAAATTAGGGTGTTAGTGGGATGTGAGGCGAAGATAACCAGTTACATGAAAATCAACGAAGTTTTGTATCAAGTATCGGTGGAGGAAGAATGCACAGTTCCAGATTATAAACTTTGTCAATGCCAATGGAGCGAAGAATCTAAAGGTATAGAAACAGAGGCTGATTCAATTGCGTCTAACACATCAGTGCGATCGGGGAGCAGGGATTTCGAAGAGGTAAGAAAGGTCGCAGAGGAGAAACCGACGACGGAAATGGATATTGCACCATCACCGTCGTCTTTTTTGGTTAGACCCATAAGACTTTTCTTTGCACCTAATTTAAGTAGATTCATAGGAAAGGAAAACCTAGGGTCTGAAACCCCAACAACTCTAAGCAGGGCTGACGTGGAAAAACAGTTTGGGCCTTCAGAAACGGCCCAATGA 1236 0.3908 MNKGGTPFFFSNFPFDLKESNLWKKFRRWGRVSDVFTSNRLNIKKQRFKFVRFQGVQNVRELENHLNTICIESWKLNANRPKYNRAAETRKEWNVKLKEKAIESEKEVKKVWREKGINTYVNTVKYGNRNTTQSQSHNRESLHAIHFRAEETPKEWLKKCYIGRVSNLSKVPCLNKSFISGGLNNIKVKFLGGFHLLLKGENETKIKEAIEENKNGLKKCLTQSFHGKSNLGLPLKLWNIDCFKHIAMLLGTLIEVDEATLALEELEYARFKIRVLVGCEAKITSYMKINEVLYQVSVEEECTVPDYKLCQCQWSEESKGIETEADSIASNTSVRSGSRDFEEVRKVAEEKPTTEMDIAPSPSSFLVRPIRLFFAPNLSRFIGKENLGSETPTTLSRADVEKQFGPSETAQ* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1084 411 CDD RRM_SF 9 79 - -
Pvu11g1084 411 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 336 - -
Pvu11g1084 411 MobiDBLite consensus disorder prediction 385 411 - -
Pvu11g1084 411 Pfam Domain of unknown function (DUF4283) 231 273 IPR025558 -
Pvu11g1084 411 Gene3D - 6 91 IPR012677 -
Pvu11g1084 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 83 IPR000504 GO:0003723
Pvu11g1084 411 PANTHER RNA RECOGNITION MOTIF 7 336 - -
Pvu11g1084 411 SUPERFAMILY RNA-binding domain, RBD 7 83 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1084 Pvu-Chr11 12169771 12171092 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1084 - K00844 pvu:PHAVU_005G131700g 542.732