Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1077 ATGAGTTCTCCACCTCTTTATGATGATGAAGACGATAATGAACCATCTTTCCTTGATGAGGCTGACATTATCCGTGAAGTTGAAATGGATAATGAAGATCTTCCTGACGCTGATGATGATTCTGAACTTGAGGATGAGGATGGTGATTTTGTGCACAAATTCACTGCTCATACTGGAGAGTTGTACTCGGTTGCCTCCAGCCCAACAGATGCCGCCCTAGTAGCTACTGGGGGTGGTGATGACAGAGGATTTCTCTGGAAGATTGGCCAAGGAGATTGGGCTTTTGAGCTTCAAGGTCATGAAGAATCTATATCTAGTTTAGCTTTTAGCTATGATGGACAGCGTTTGGCATCAGGAAGCTTAGATGGAATTATTAAAGTATGGGATGTATCAGGAAATTTGGAAGCTAAAAAACTTGAAGGTCCTGGAGGGGGCATTGAGTGGCTTAATTGGCATCCAAGAGGACACATACTCTTAGCTGGTTCTGAGGATTTTACCATTTGGATGTGGAATACGGATAATGCTGCCTTACTTAATACTTTTATTGGTCATGGTGACAGTGTAACCTGTGGCGATTTTACTCCTGATGGGAAAATAATATGTACTGGATCCAACGATGCAAGCATGAGAATATGGAATCCAAAAAGTGGAGAAAGTACTCATGTTGTGCGGGGCCATCCATATCATAACGAGGGATTAACATGCTTGACAATAAATTCTACTTCAACTCTCGCACTTTCTGGTTCTAAGGATGGATCTGTCCATATTGTGAATATTACCACAGGAAGAGTTGTTGATAATAATGCTCTTGCTTCTCATTCAGACTCCATTGAGTGTGTTGGGTTTGCACCAAGTGGTTCCTGGGCTGCAGTTGGAGGCATGGATAAAAAATTGATCATCTGGGATATAGAGCATTTAATACCCCGAGGAACCTGTCAACACGAGGATGGAGTGACATGTTTGGCATGGCTTGGTGCATCATATGTAGCTACTGGTTGTGTGGATGGTAAGGTGAGATTGTGGGATAGCAGGTCTGGAGAATGTGTAAAAACATTAAAGGGGCACTCTGATGCCATTCAGTCTCTTTCAGTGTCTGCTAATCGGGATTACCTTGTTTCGGCCTCAGTAGATGGAACAGCTTGTGCTTTTGAGGTTGAAAATTTTCGGTAA 1170 0.4274 MSSPPLYDDEDDNEPSFLDEADIIREVEMDNEDLPDADDDSELEDEDGDFVHKFTAHTGELYSVASSPTDAALVATGGGDDRGFLWKIGQGDWAFELQGHEESISSLAFSYDGQRLASGSLDGIIKVWDVSGNLEAKKLEGPGGGIEWLNWHPRGHILLAGSEDFTIWMWNTDNAALLNTFIGHGDSVTCGDFTPDGKIICTGSNDASMRIWNPKSGESTHVVRGHPYHNEGLTCLTINSTSTLALSGSKDGSVHIVNITTGRVVDNNALASHSDSIECVGFAPSGSWAAVGGMDKKLIIWDIEHLIPRGTCQHEDGVTCLAWLGASYVATGCVDGKVRLWDSRSGECVKTLKGHSDAIQSLSVSANRDYLVSASVDGTACAFEVENFR* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1077 389 CDD WD40 95 380 - -
Pvu11g1077 389 SUPERFAMILY Tricorn protease domain 2 59 387 - -
Pvu11g1077 389 ProSitePatterns Trp-Asp (WD) repeats signature. 158 172 IPR019775 -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 304 - -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 347 - -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 352 389 - -
Pvu11g1077 389 SMART WD40_4 47 87 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 90 129 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 345 384 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 263 302 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 174 213 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 132 171 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 216 258 IPR001680 GO:0005515
Pvu11g1077 389 SMART WD40_4 305 342 IPR001680 GO:0005515
Pvu11g1077 389 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 7 388 - -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 389 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 272 302 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 218 256 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 96 129 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 177 213 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 313 342 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 139 171 IPR001680 GO:0005515
Pvu11g1077 389 Pfam WD domain, G-beta repeat 346 379 IPR001680 GO:0005515
Pvu11g1077 389 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 7 388 - -
Pvu11g1077 389 Gene3D - 47 387 IPR015943 GO:0005515
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 131 - -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 139 180 IPR001680 GO:0005515
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 88 IPR001680 GO:0005515
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Pvu11g1077 389 ProSitePatterns Trp-Asp (WD) repeats signature. 329 343 IPR019775 -
Pvu11g1077 389 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Pvu11g1077 389 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Pvu11g1077 389 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 138 IPR001680 GO:0005515
Pvu11g1077 389 ProSitePatterns Trp-Asp (WD) repeats signature. 116 130 IPR019775 -
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 351 IPR001680 GO:0005515
Pvu11g1077 389 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 304 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1077 171 388 Miscellaneous Gene Families AT5G08390 25.893 2.94e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1077 K24725 - gmx:100790414 732.25