Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1065 ATGAAGAAAATGAATAACGCTCACACGATGCGCGTGACTTTCACCGTGGCCACAGTAGCCGTTGCAGCTGCTATGATATCCATTTTCTTCTACGCGCGAAGGCGCAAGAAGCGCGACTCTTCTTCTAGTTCGTGCTATTTGCATTCCGAACGGAAACCACAGAGTGCATTCAAGCGCGTTTTATCGGATAATTCCTACACTCCGTTCAAGCACCTCAGCAACGACGAGAATGCTTCGAATTCGCATCCGTTTGAGGCGGAGATTACAGCATTGTTGAAAACTCCTCAGCCTGAAATTGAATTTGGAACTGAGATAGTGGACATGGAAATGAAGGATTCATATGTTTGGGTTCACACCGAGACGCAGTTAAAGGAATTAGTTGATGTGTTGAGCGAAGAGAGGTTTTTTGCTGTGGATACAGAGCAACATAGCTTACGATCTTTTCTAGGCTTTACGGCATTAGTTCAGATTTCTACGCGGGAGAAAGATTATTTGGTTGACGCAATTGCCCTGCATGATTTTATGGGCATTCTTCGCCCTGTTTTCGCCAATCCTTCAATTTGTAAAGTGTTCCATGGTGCTGACAATGATATAGTCTGGCTACAGAGGGACTTCCACATATATGTTGTTAACCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACATAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAGCGTGAAGATTGGCGACAACGCCCTCTCTCAGCAGAAATGGTACATTATGCCCGAACGGATGCACACTTTCTGTTGTATATTGCAAATTGTCTGATCAATGAACTCAAACAACTGGACAGCGAAAACTCTTGTTCCAGTGACAAATTCCATTTTGTTCTTGAGGCTAGTCGGCGTTCAAACATGATATGTTTACAACTTTTCACAAAGGAGATTGAAGGATATCCTGGTGAATCTTCTGCATTATCATTATTTTCTCGTCAAGTGAGTAGTCATGGTTGTCCGTCTATATCAAATGAAACTCAGATTATTGTGAGGCAACTTTGCGCATGGAGAGATCTGATGGCTCGTATTCATGATGAGAGCTTAAAATATGTACTCTCGGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTTCAGCTAGTCACTCTGAAATACCCAAGACCATAGCCCAGGCTGACATCAATATGGAAATGGGTGTGAACTCTTTCATCATTTCCCCATCTCCTGTTGTTTGCAGTCACCTGAGTGATATCTATCATATTCTTGCAAACAAGTTGGTTAATGATGATATTTATTCAGTGATTCTTCAGAAGTCTATAGGTCAAAATGGGATTTGTCCACTTTCTATATTTAATTATGCTTTGTTGATAAACAGTAACCTAAGACCTAATTTAGCCCATAAACAACTGGGCCCAAAACATCCTAAACAATTTTCTCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAGTTCTCTTGCAAATCTCCTGTTTATCACAATTGCCGGATATTTGCTAATGATGGGAGGCTACTTTGTTATTGTGACGAGAAGAAGCTTAAATGGTATCTTAGTCGGGATCTTGCAAAACTTGTTGGCCAGGATCCCCCCTCTATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGACAATGACTTCTATATCCAGAGCAAGAAAAATATATGTGTTGGATGTGGTGAAGGAAATCACTATTTACGGTATCGAATAATCCCATCATGTTACAGAGTACATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAGGTCGCACATGCTGCTGCAGAAAAGTACAAGAGGAAAATAGCTGTTGAATTTGGGATTCCTCTCTACCTTCAGAGGGTAGTTCATCCAAGTCAAAAGACTGAAAAACAAATTGAAGAGAATGGTGTATCTCCATTACAGTTACGAACAGCTGCTATGGCTCTTTTAAGCCATGGACCAAGAATGCCTCTAAGTCGCCGAGAAGAACTAACTGAGATTATAAAGAGATATTATGGAGGAAGAGACATATCTGACGAAGATCTAGAAAGAGCTTTGCAAGTTGGCATGACGCCTCATGAGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTACAGGGAATACTACACTGCTAGAACAGAATAATCATATTGGTTGCTCACCCACAATGAGCAATGTGGATGACTTAAAAGTTGATGGCTCATATACAGATGAAGTAGATACAGAACTTTTTATGAGAAAAGATGATTTTAGAAACTCCACTTCAGCTTCTGATATTACAGTTAATGGACCTGGCTCTGCAACTTTGAATAAAAATGCGATTACAGTTGAAACTGCAGATTGCAATGAAGGCGTCGACTCTGCTGTAAATGTTGATAACAGCAGTCTGAGCAGAAGGGAAACAAATGAACTTAGTGACTTGTCTTGTTCTCCCAATGATGAAAAATCTATGCATACCGAACATAATTCAAAACTCTCTCTCTTGGGACATGGACCTCATGGGAAACAAGTTGTAGAACATTTACTGAGGGAGTATGGTGAAGATGGTATTCGAGACTTTTGTCAGAGATGGAGACAAGTATTTGTGGACGCTGTAAAACCACGTTTTCTTCCGGTTGGTTGGGATGTAAAACACAGTGGAAGAAGGGAGTTCGGGGAGTTCAGTGCGTACAAACCTAAGAGAGCGGCTTCTGCAACTGGAGAGTAA 2778 0.4096 MKKMNNAHTMRVTFTVATVAVAAAMISIFFYARRRKKRDSSSSSCYLHSERKPQSAFKRVLSDNSYTPFKHLSNDENASNSHPFEAEITALLKTPQPEIEFGTEIVDMEMKDSYVWVHTETQLKELVDVLSEERFFAVDTEQHSLRSFLGFTALVQISTREKDYLVDAIALHDFMGILRPVFANPSICKVFHGADNDIVWLQRDFHIYVVNLFDTSKACEVLSKPHKSLAYLLETYCGVTTNKLLQREDWRQRPLSAEMVHYARTDAHFLLYIANCLINELKQLDSENSCSSDKFHFVLEASRRSNMICLQLFTKEIEGYPGESSALSLFSRQVSSHGCPSISNETQIIVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPSASHSEIPKTIAQADINMEMGVNSFIISPSPVVCSHLSDIYHILANKLVNDDIYSVILQKSIGQNGICPLSIFNYALLINSNLRPNLAHKQLGPKHPKQFSRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDEKKLKWYLSRDLAKLVGQDPPSIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAVEFGIPLYLQRVVHPSQKTEKQIEENGVSPLQLRTAAMALLSHGPRMPLSRREELTEIIKRYYGGRDISDEDLERALQVGMTPHERRRFEKKRGFSFKHSTGNTTLLEQNNHIGCSPTMSNVDDLKVDGSYTDEVDTELFMRKDDFRNSTSASDITVNGPGSATLNKNAITVETADCNEGVDSAVNVDNSSLSRRETNELSDLSCSPNDEKSMHTEHNSKLSLLGHGPHGKQVVEHLLREYGEDGIRDFCQRWRQVFVDAVKPRFLPVGWDVKHSGRREFGEFSAYKPKRAASATGE* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1065 925 SMART 35exoneu6 114 282 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pvu11g1065 925 SUPERFAMILY HRDC-like 342 395 IPR010997 GO:0000166|GO:0044237
Pvu11g1065 925 Pfam 3'-5' exonuclease 114 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Pvu11g1065 925 Gene3D HRDC domain 335 436 IPR044876 -
Pvu11g1065 925 SUPERFAMILY Ribonuclease H-like 52 284 IPR012337 -
Pvu11g1065 925 MobiDBLite consensus disorder prediction 816 843 - -
Pvu11g1065 925 Gene3D - 51 318 IPR036397 GO:0003676
Pvu11g1065 925 MobiDBLite consensus disorder prediction 816 836 - -
Pvu11g1065 925 Pfam HRDC domain 350 388 IPR002121 GO:0003676
Pvu11g1065 925 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 3 919 IPR045092 GO:0000175|GO:0000467
Pvu11g1065 925 PANTHER PROTEIN RRP6-LIKE 3 3 919 - -
Pvu11g1065 925 CDD Rrp6p_like_exo 110 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1065 Pvu-Chr11 11704687 11712159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1065 K12951 - gmx:100791485 1511.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1065 11 11704687 11712159 Pvu11g1065 11 11704687 11712159 ECH