Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1028 ATGAATATACCTAATCAAGCTATCGAACAAGAAGATGAAACAAAACCTTTGTGGAGATATGTTTCAAAGCTAAGAAAAACAACTGGTGGTGGAAATAATATGATCCAATGTAGTTTGTGTAATTTTATATTGAATGGATCTTACACTCGAGTAAGAGCTCATTTATTAAAACTTACGGGAGCAGGAGTTAGAAGTTGTCCGTATGTGACCGCGTCAAAACTTGTTGAGTTAAAAAAATTAGACAATGAAGCAAAATTGAAAATAGAGGGTTTGAAACAAAAAAAAGTCTCTCTACCACCTGTATCTGATGAAGGAAATCAGACTAGGAGTGATGTTAACCCAAAATTCAAAGGTTTTTTACAAGCTGCTTTCAATATTCAGATGAGAGATACTCTTGATTGTGAAATTGCAAGAATGTTTTATTCTTCAGGACTACCGTTTCATTTAGCAATAAGTCCTTATTATAGAAGTGCATTTTCTAATGCAACCAATACTTCTAATCTTAGTGGATATGTACCGCCAACATATAATAAATTGAGAGGTCCTTTGCTTTCAAAGGAAAGAAGTCATGTAGAAAATCTTTTGCAACCTATACGAAACTCGTGGAATCAGAAAGGTGTAACAATTGTTAGTGATGGGTGGAGTGATCCTCAAAGAAGACCACTCATAAATTTCATGGCTATCACTGAGTGGGGATCAATGTTTTTAAAGTCAGTAGATGGATCTGGTGAGATAAAGGACAAAGAATTTATTGCTAAACACATGAGAGATGTAATTATGGAGGTTGGACACAACAATGTGGTACAAATAATAACTGATAATGCAGTTGTATGTAAGGCAGCGGGTATGCTCATAGGATATGAATTTCCTTCAATTTATTGGACTCCTTGTGCAGTTCACACATTGAATCTTGCATTGAAAATATTTTTGCTCTCTGTTGCTCCAATAAGATTTGCTTCAACCATAGTCATGTCAAAAAGGTTTAGAAGTTTGAAAAAAGGACTCCAAGAGATGGTTATTAGTGATGAATGGTCTTTTTACAAAAAGGATAATGTGGATAGTGCACAATTTGTGAAAGAAATTTTGTTGAATGATAATTGGTGGATGAAGGTTGATTATATACTTGCTTTTACTGCCCCTATTTATGATAGTAGCACACTTCTTCATTGTCTGGCTCATTCTTTAAATCCAAGATATTATAATCGTGAATGGTTAGATGAAGATTCAAAAAGACTTGCCCCACATCAAGATCATGAAATTACTCAGGAAAGAAAAAAATGTTTTATGAGATACTTTGATGATGCAAACATAAGGACACAGGTAAATATAGAGTTTGCAAACTTTTCAGGTCGAAGAGAAGATTTTGATGATGCTGACTCTTTAAGGGATAGAATAATCTCCGTCTTCTATCAAGAAATTCCTCAAAATACAAAGAAGAGGAAACTAAATTGTGGAATATTGCAGGAGATGATTTTTCATTGGATGAAAATGAAATTCTTGAGATTGTTAATTTATCTCTTGATGAACCAGAATTAG 1536 0.3372 MNIPNQAIEQEDETKPLWRYVSKLRKTTGGGNNMIQCSLCNFILNGSYTRVRAHLLKLTGAGVRSCPYVTASKLVELKKLDNEAKLKIEGLKQKKVSLPPVSDEGNQTRSDVNPKFKGFLQAAFNIQMRDTLDCEIARMFYSSGLPFHLAISPYYRSAFSNATNTSNLSGYVPPTYNKLRGPLLSKERSHVENLLQPIRNSWNQKGVTIVSDGWSDPQRRPLINFMAITEWGSMFLKSVDGSGEIKDKEFIAKHMRDVIMEVGHNNVVQIITDNAVVCKAAGMLIGYEFPSIYWTPCAVHTLNLALKIFLLSVAPIRFASTIVMSKRFRSLKKGLQEMVISDEWSFYKKDNVDSAQFVKEILLNDNWWMKVDYILAFTAPIYDSSTLLHCLAHSLNPRYYNREWLDEDSKRLAPHQDHEITQERKKCFMRYFDDANIRTQVNIEFANFSGRREDFDDADSLRDRIISVFYQEIPQNTKKRKLNCGILQEMIFHWMKMKFLRLLIYLLMNQN* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1028 511 Coils Coil 74 94 - -
Pvu11g1028 511 PANTHER OSJNBA0013A04.12 PROTEIN 5 301 - -
Pvu11g1028 511 PANTHER OSJNBA0013A04.12 PROTEIN 384 465 - -
Pvu11g1028 511 PANTHER OSJNBA0013A04.12 PROTEIN 307 383 - -
Pvu11g1028 511 SUPERFAMILY Ribonuclease H-like 204 436 IPR012337 -
Pvu11g1028 511 Pfam Protein of unknown function (DUF 659) 174 309 IPR007021 -
Pvu11g1028 511 PANTHER HAT TRANSPOSON SUPERFAMILY PROTEIN 307 383 - -
Pvu11g1028 511 PANTHER HAT TRANSPOSON SUPERFAMILY PROTEIN 5 301 - -
Pvu11g1028 511 PANTHER HAT TRANSPOSON SUPERFAMILY PROTEIN 384 465 - -
Pvu11g1028 511 ProSiteProfiles Zinc finger BED-type profile. 12 73 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1028 Pvu-Chr11 10771985 10774159 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1028 - - pvu:PHAVU_011G099800g 1041.95