Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g1027 | ATGGGAAAGAAGAACGAGAACCAGAAAACGGGGCTAGGTCGAGCCCTGGTGAAGCAGCACAATCAGATGATTCAACAGAGCAAGGACAAGTCTCGTTTCTACAGAAAGAAGGTTCTCGAATCCTTCACCGAAGTCTCCGACATCGACGCCATCATCGAACAATCCCTCGAATCTGTTCCCGAACGTGCCGCCGCCTCCACCACCATCATCAGCCTGGACCCTGCCGAAATGACGCCTGAAGAAACGAGGAAGCAGGAGGAGGCGCTCCACGCCAGCAGCCTCCGAGTTCCGCGCCGGCCTCCGTGGACTCCCGACATGTCTCCCGAGGAGCTTCATGACAGCGAAACGCAAGCTTTCTTGGTTTGGCGTCGCAGTTTAGCGAGGCTTGAGGAGAATAAGAAGCTTGTCCTTACTCCGTTTGAGAAAAATATTGACATCTGGAGGCAGCTCTGGCGTGTGGTTGAGCGTAGTGATCTGCTTGTTATGGTTGTTGATTCACGAGATCCTCTGTTTTATCGTTGTCCAGACCTGGAGGATTATGCACTGGAGGTTGATGAACATAAACGTACATTGCTTCTAGTTAATAAGGCAGATCTTTTGCCAACTTCTATGAGAGAGAAATGGGCAGAGTATTTTCGAGCTCATGATATTCTCTTCATCTTCTGGTCTGCTAAAGCTGCTACAGCAGCCCTGGAAGGAAAAAAGCTTGGTTCATCATGGGATGATGATAACACGGGGAGAACTAATAGCCCAGACACAGACACAGACACAAAGATATATGGAAGGGACGAGCTATTGGCCCGCCTGCAATCAGAAGCAGAAGAGATAGTGAACAGGAGGAGGAATTCAGGCACCTCTGATGCAGGGCCATCTAACATTAAATCTCATGCTGAAAATACTGCTGGCAGTTCACCATCGAGTAATGTAGTTGTGGGATTTGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATTAATGCTCTGGTTGGTCAAAAACGGACTGGTGTCACCTCCACCCCCGGTAAAACAAAGCACTTTCAGACATTAATTATCTCTGATAAGCTGACCCTCTGCGATTGTCCTGGATTAGTTTTTCCATCTTTCTCTAGCTCAAGATATGAGATGATTGCTTGTGGGGTGTTGCCCATTGATAGGATGACTGAACACCGGGAATCTGTCCAAGTTGTAGCTGATAGAGTCCCAAGAGATGCCATCGAACAGATTTACAAGATAAGGCTTCCTAAACCTAAGCCATATGAGTCCCAATCCCGTCCCCCTCTAGCATCTGAACTTTTAAGAGCATACTGTGCTTCCCGTGGGTATGTTGGTTCTAGTGGACTCCCTGATGAAACTAGGGCTACCCGTCAGATATTGAAAGATTACATTGATGGGAAGCTGCCTCACTATGAAATGCCTCCAGGTACATCAGAAGAGGAACAAGCTTTGGAAGATCCCACCCGACATGACTCGGTTGACTTGCATGCATCAGATTCGTCTGATGTTGAAGATTCTTCAGATGTTGAGAGTGGTGTTGCACCAAATCTTGAGCATGTATTGGACGACCTCAGTTCATTTGACATGGCCAATGGACTTGCGCCAAAAAGTACAACTCTTAAGAAGCCCAAGGAATCTCATAAACACCATAAAAAGCCACAGAGGAAAAAAGATCGTACCTGGAGGACAGGAAACACTGATGCTGATGGGATGCCGATTGCAAGATTCTTTCAGAAACCAGCTAATACAGGTTCTCTGAAGGATTGA | 1761 | 0.4708 | MGKKNENQKTGLGRALVKQHNQMIQQSKDKSRFYRKKVLESFTEVSDIDAIIEQSLESVPERAAASTTIISLDPAEMTPEETRKQEEALHASSLRVPRRPPWTPDMSPEELHDSETQAFLVWRRSLARLEENKKLVLTPFEKNIDIWRQLWRVVERSDLLVMVVDSRDPLFYRCPDLEDYALEVDEHKRTLLLVNKADLLPTSMREKWAEYFRAHDILFIFWSAKAATAALEGKKLGSSWDDDNTGRTNSPDTDTDTKIYGRDELLARLQSEAEEIVNRRRNSGTSDAGPSNIKSHAENTAGSSPSSNVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSFSSSRYEMIACGVLPIDRMTEHRESVQVVADRVPRDAIEQIYKIRLPKPKPYESQSRPPLASELLRAYCASRGYVGSSGLPDETRATRQILKDYIDGKLPHYEMPPGTSEEEQALEDPTRHDSVDLHASDSSDVEDSSDVESGVAPNLEHVLDDLSSFDMANGLAPKSTTLKKPKESHKHHKKPQRKKDRTWRTGNTDADGMPIARFFQKPANTGSLKD* | 587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 12 | 28 | - | - | |
| Pvu11g1027 | 586 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 145 | 399 | IPR027417 | - | |
| Pvu11g1027 | 586 | Pfam | 50S ribosome-binding GTPase | 311 | 367 | IPR006073 | GO:0005525 | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 527 | 586 | - | - | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 237 | 257 | - | - | |
| Pvu11g1027 | 586 | Gene3D | - | 146 | 367 | IPR027417 | - | |
| Pvu11g1027 | 586 | PANTHER | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED | 6 | 581 | IPR043358 | GO:0003924 | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 464 | 509 | - | - | |
| Pvu11g1027 | 586 | Gene3D | - | 370 | 472 | IPR023179 | - | |
| Pvu11g1027 | 586 | PRINTS | GTP1/OBG GTP-binding protein family signature | 311 | 331 | IPR006073 | GO:0005525 | |
| Pvu11g1027 | 586 | PRINTS | GTP1/OBG GTP-binding protein family signature | 357 | 372 | IPR006073 | GO:0005525 | |
| Pvu11g1027 | 586 | PANTHER | - | 6 | 581 | - | - | |
| Pvu11g1027 | 586 | CDD | HSR1_MMR1 | 146 | 366 | - | - | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 282 | 305 | - | - | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 540 | 556 | - | - | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 279 | 305 | - | - | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 480 | 501 | - | - | |
| Pvu11g1027 | 586 | ProSiteProfiles | Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. | 147 | 366 | IPR030378 | GO:0005525 | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
| Pvu11g1027 | 586 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu11g1027 | Pvu-Chr11 | 10751099 | 10754957 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g1027 | K14539 | - | gmx:100817523 | 996.112 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pvu11g1027 | 11 | 10751099 | 10754957 | Pvu11g1027 | 11 | 10751099 | 10754957 | ECH |