Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1008 ATGGGGGTGCCTTCGTTCTATAGATGGTTGACTAACAAATATCCCAAGGTGGTGCAAGATGTAGACGCCGCCATGCAAGACCCAAATGGAGTGAAATATGATAACTTGTATGTTGACATGAATGCCATCATCCATCCTTGCTTTCACCCTGATGATCACAATAACAACATTCCATTTCCAACTACATTCGAAGATGTGTTCAGAAATGTGTTTGACTACATTGATCGACTTGTTGACACTGTTAAGCCTCGCAGGCTCCTTTACATGGCTATTGATGGGGTTGCCCCACGTGCCAAAATGAACCAGCAGCGATCAAGACGTTTTCGAGCTGCTAAGGACAACGAAATTCATGAAGCTGAGGAAGAGAGGCTAAGGAAACAATTTGAAATGGAAGGGAAACAAGTTCTTCCTAAACAAGAAACTGAACTAGCAGATTCCAATATTATAACACCAGGCACTGAGTTCATGCATGAACTCTCAAAGGCACTTAAAAGCTATATCTCTTCAAGGATAATTTGTAACTCATTGTGGAAGGATATTATGGTAATTCTCTCTGATGCTAGTGTTCCCGGCGAAGGGGAGCATAAGATTATGTCATACATACGCAAACAGCGTAGTCTGGAGGAGTATGATCCAAATACCAGCCACTGCTTATATGGCTCGATAGAAAATCCTCCCAAAACTTGTAGCATTGAGCTTGAGCGGATAATTGATGATTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTTCCCCACATGCCATCTTTGGATATTCATGAGGGGGCTATTGATTTGCTAATGACTGTTTACAAGGAAGAATTCAATACACTTGGAGGATATCTTGTGGACATGAGCAGGGTTGGGGAGAAAAATGCTGCTTTTATGAAGTTATCAAGAGTTGAAAAATTTATACTTAAGGTTGGTACATATGAAGAGAAAATCTTTAAGAGAAGATCTGAAGTACGAGAACGTAAATTGAAAAGGCTTATTCAAGATAATCAGGAAGCTAAGCGGGAAGAAACGAATGGAAAATATTTCTCGGATCTTGACAATGAAGATACTTCTGATTGTACTCTTCTGATTAAGAAGGCACCGGATTCAAAGAACTCAATTTTGGTCAATAACGTTTCTGCTACACATGCTGAAATTGAGCAAAACACAAAGGATTTAAAAGATGAATTGAAGAGAAGTATTAGAAAAAAATGTGACTTACGTTTGAGTGAAGATTTCCTAATTGACAAGATAAAATTTGGAGCACCTGGTTACAAAGAAAGATATTATAAAGCGAAGTTTTCTGTGGAAACTTCTACTGACATTGAGGGGAAAAGAAAAGAAATAGTCGAGAACTACACCGAAGGATTGGTATGGGTTCTTCAATACTATTTTTCAGGAGTTGCTTCCTGGAGATGGTTTTACCCGTTCCACTATGGTCCTTTTGCTTCGGACTTAAAGGGCATGGGTCAAGTGAGAGTAAAATTTGAGAAAGGTGTCCCATTCTTACCACTTGATCAACTTTTAAGTGTCCTCCCCCCGGCAAGTGCTGATGCACTTCCAAAAGCCTATGAACAACTGATGCTAGATGAGCAATCTAGAATACTTGACTTCTATCCTCAGGATTTTGAAGTTGACACTGAAGGAAAGCCCTTCACGTGGCAGGGAATTTGCAAACTTCCGTGGATAGATGATGGCCGGCTTGTCGCTGAAACCAAAGAACTCAAAAATGAATTATCTGAAAAGGAGGCCATAAGAAATTCACCCAAGGCTGATAGCTTGCTTGTTAGAAGCTCTAGCAAATTAGCAGAGAAATTCGGTTCTCTATCTGTTGACCCAAATGCGCCTTGCAAGTTAGACACAAGAATAAGTGATGGCATTGGGGGTACCATAAGTCTTTGCCATGAGTTTGTTGACAAACCTTGCTCTGACATTTGTGACAGCAAAGAAGATCGTGTCTTATGTGTCTATTACGAGCTTCCTACTGGTAGCAATCATATTCCTCGTTTACTATCGGGTGTGAGCCTTCCAGAGAAGACAATCTTTGAAGGTGATATCATGGAAACTGAACTGTGGCATGAACGTCAGAAACATTTTAGCATTTATGGAAGGGTCCAAAATCAAGACAAATCGAGGAGTGAAGACAGAAGCAATACTTCAAGGTTTTCCTCAAATGCACCTTCCTTCATTCACATAAAAGGTGGTGGTGGTGTTGGATGGGGTTTAGGTAGAGGGAGAAAAGTAAATACAGTGAAAAATGAGAGAATTCCATCTCCTAGTCATAAACAACGTAATGATGCAGGCTCTTACCATGTAACAACTACACGTGACACCACATCACAACACTTTGTGAATGACTTTAGACAATTCAGAATATCAGAGTCTGGTCCCTTTCCGAAGTCTACTAGCAGTTTTCAGTCACGACGACCATATCATAATAATAGCCGTAGCATGAATCAGACAAAAAGTGCTCCTAATCAACAAGCTCCAGAATCTGAGAGGCCTTTTGGTCGGGGACGAGGTAAGTAG 2526 0.4038 MGVPSFYRWLTNKYPKVVQDVDAAMQDPNGVKYDNLYVDMNAIIHPCFHPDDHNNNIPFPTTFEDVFRNVFDYIDRLVDTVKPRRLLYMAIDGVAPRAKMNQQRSRRFRAAKDNEIHEAEEERLRKQFEMEGKQVLPKQETELADSNIITPGTEFMHELSKALKSYISSRIICNSLWKDIMVILSDASVPGEGEHKIMSYIRKQRSLEEYDPNTSHCLYGSIENPPKTCSIELERIIDDFIFMCFFAGNDFLPHMPSLDIHEGAIDLLMTVYKEEFNTLGGYLVDMSRVGEKNAAFMKLSRVEKFILKVGTYEEKIFKRRSEVRERKLKRLIQDNQEAKREETNGKYFSDLDNEDTSDCTLLIKKAPDSKNSILVNNVSATHAEIEQNTKDLKDELKRSIRKKCDLRLSEDFLIDKIKFGAPGYKERYYKAKFSVETSTDIEGKRKEIVENYTEGLVWVLQYYFSGVASWRWFYPFHYGPFASDLKGMGQVRVKFEKGVPFLPLDQLLSVLPPASADALPKAYEQLMLDEQSRILDFYPQDFEVDTEGKPFTWQGICKLPWIDDGRLVAETKELKNELSEKEAIRNSPKADSLLVRSSSKLAEKFGSLSVDPNAPCKLDTRISDGIGGTISLCHEFVDKPCSDICDSKEDRVLCVYYELPTGSNHIPRLLSGVSLPEKTIFEGDIMETELWHERQKHFSIYGRVQNQDKSRSEDRSNTSRFSSNAPSFIHIKGGGGVGWGLGRGRKVNTVKNERIPSPSHKQRNDAGSYHVTTTRDTTSQHFVNDFRQFRISESGPFPKSTSSFQSRRPYHNNSRSMNQTKSAPNQQAPESERPFGRGRGK* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1008 841 MobiDBLite consensus disorder prediction 702 727 - -
Pvu11g1008 841 PIRSF Exonuclease_Xrn2 1 224 IPR017151 GO:0004534|GO:0005634|GO:0006139
Pvu11g1008 841 PIRSF Exonuclease_Xrn2 221 839 IPR017151 GO:0004534|GO:0005634|GO:0006139
Pvu11g1008 841 Pfam XRN 5'-3' exonuclease N-terminus 1 221 IPR004859 GO:0003676|GO:0004527
Pvu11g1008 841 MobiDBLite consensus disorder prediction 794 829 - -
Pvu11g1008 841 Pfam Xrn1 helical domain 231 685 IPR041412 -
Pvu11g1008 841 Gene3D - 135 221 - -
Pvu11g1008 841 Gene3D - 1 134 - -
Pvu11g1008 841 PANTHER 5'->3' EXORIBONUCLEASE 222 725 IPR027073 -
Pvu11g1008 841 PANTHER 5'->3' EXORIBONUCLEASE 1 221 IPR027073 -
Pvu11g1008 841 Coils Coil 321 341 - -
Pvu11g1008 841 MobiDBLite consensus disorder prediction 761 787 - -
Pvu11g1008 841 CDD PIN_XRN1-2-like 36 220 - -
Pvu11g1008 841 Gene3D - 492 588 - -
Pvu11g1008 841 PANTHER OS11G0157000 PROTEIN 1 221 - -
Pvu11g1008 841 PANTHER OS11G0157000 PROTEIN 222 725 - -
Pvu11g1008 841 Coils Coil 375 402 - -
Pvu11g1008 841 MobiDBLite consensus disorder prediction 749 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1008 Pvu-Chr11 10154540 10164112 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1008 - - pvu:PHAVU_011G097800g 1705.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1008 11 10154540 10164112 Pvu11g1008 11 10154540 10164112 ECH