Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1002 ATGGGAAGTATTTCAGGAGTCTCCTCTGCAGTTGCCAGAAGATTAGAAGGGAAGGTGGCGTTGATCACAGGGGGAGCAAGTGGCATAGGGGAGTGCACGGCGAGACTGTTTGCGAAGCATGGAGCCAAAGTAGTGATCGCTGATATCCAAGACGAGTTAGGTCACTCAGTTTGCAAGGACATAGACTCCTCCTTCTACGTCCACTGCGACGTCACAAAAGAGGAACACGTGGAACGTGCCGTCAACACTGCTGTTTCTAGGTTCGGGAAACTAGACATCATGCACAACAACGCAGGAATCATCGGAGTGTGGAACCCCAACATTATTCACAACAAGAAATCCGATTTCGAGGAAGTGATTAGAACAAACTTGGTCGGTGTGTTCCTGGGAATGAAGCATGCGGCGAGGGTAATGGCCCCTTCTCGACGCGGCAGCATAATCGCAACCGCAAGCACGTGTGGACGCATAGGCGGCATGGCTTCGCACGCTTACACGTGCTCCAAGCATGGTATTGTGGGGCTCGTGCGAAACGCAGCAGTGGAGCTTGGACCCTTGGGGATACGAGTGAATTGTGTGTCTCCATACGCGGTTCCTACGCCGATGAGTAAGAGTTTTCTGAACACTGATGATGAAGGGATTGCTGCACTTTATTCCAATCTGAAAGGAGTTACTCTTAAGCCCCAAGATGTGGCTGAAGCTGTGGTTTACTTGGGCAGTGATGAGTCAAAGTATGTTAGTGGGCATGACCTTGTTGTGGATGGAGGCTTCACTGTAGTCAATGCTGGTATGTGTTCGTTTGGGCAGTAG 807 0.5068 MGSISGVSSAVARRLEGKVALITGGASGIGECTARLFAKHGAKVVIADIQDELGHSVCKDIDSSFYVHCDVTKEEHVERAVNTAVSRFGKLDIMHNNAGIIGVWNPNIIHNKKSDFEEVIRTNLVGVFLGMKHAARVMAPSRRGSIIATASTCGRIGGMASHAYTCSKHGIVGLVRNAAVELGPLGIRVNCVSPYAVPTPMSKSFLNTDDEGIAALYSNLKGVTLKPQDVAEAVVYLGSDESKYVSGHDLVVDGGFTVVNAGMCSFGQ* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1002 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 259 IPR036291 -
Pvu11g1002 268 PRINTS Glucose/ribitol dehydrogenase family signature 19 36 IPR002347 -
Pvu11g1002 268 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Pvu11g1002 268 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Pvu11g1002 268 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Pvu11g1002 268 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Pvu11g1002 268 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Pvu11g1002 268 Gene3D - 5 265 - -
Pvu11g1002 268 CDD secoisolariciresinol-DH_like_SDR_c 14 257 IPR045309 GO:0016616
Pvu11g1002 268 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Pvu11g1002 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Pvu11g1002 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Pvu11g1002 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Pvu11g1002 268 PANTHER MOMILACTONE A SYNTHASE 8 262 - -
Pvu11g1002 268 Pfam Enoyl-(Acyl carrier protein) reductase 24 257 - -
Pvu11g1002 268 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 8 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1002 Pvu-Chr11 10057059 10058249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1002 11 258 Acyl Lipid Metabolism Gene Families AT1G24360 30.315 1.59e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1002 - - gmx:100810754 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1002 11 10057059 10058249 Pvu11g1002 11 10057059 10058249 ECH