Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1001 ATGGCACATGTTTCTGTTGTCTCAGCTGCTGTTAAAAGGCTTGAGGGGAAAGTGGCCATTATCACTGGTGGTGCCAGCGGTATTGGTGAGGCCACTGCAAGACTCTTCTCCGAGCATGGAGCTCATGTGGTGATAGCTGATATTCAAGACGATTTGGGTCTTTCTCTTTGCAACGAATTGGAATCTGCTGTGTATGTTCATTGTGATGTGACAAAGGAAGAAGACGTTGAAAAGTGCGTGAACGTAGCAGTTTCCAAGTATGGGAAGCTGGACATCGTGCTGAATAACGCTGGTACATGCGATGAGTTCAAACGAAGCATAGTGGAGAACAGCAAGTGTGATTTTGAGAGAGTGATCAATGTGAACTTGGTTGGTCCATTTCTGGGAACAAAGCACGCAGCAAGGGTAATGATTCCTGCTAAAAGGGGCTGCATAATTAACACATCTAGTGTTGCTGGATGCATTGGTGGAGGGGCTCCACATGCCTACACCATCTCAAAGCATGGCCTAGTGGGACTGACGAAAAACACAGCGGTGGAGCTTGGACAGTTCGGTATTCGGGTGAACTGTGTGTCTCCTTATGTGGTTGCCACACCGTTGTTGAATAAGTATTTCAATCTTGATGAAGAAGGAGTTCGTGAGGCTTATTCCAACCTAAAAGGTTCTTATCTAGTGCCCAACGATGTGGCCGAAGCTGCTCTTTACTTGGCAGGTGATGAGTCAAAGTTTGTTAGTGGTCACAATCTTGTGATAGATGGAGGCTTCACCACTACAAATGCAGGCTTTTCTGTTGGCCGGTCTGAGTAA 807 0.4647 MAHVSVVSAAVKRLEGKVAIITGGASGIGEATARLFSEHGAHVVIADIQDDLGLSLCNELESAVYVHCDVTKEEDVEKCVNVAVSKYGKLDIVLNNAGTCDEFKRSIVENSKCDFERVINVNLVGPFLGTKHAARVMIPAKRGCIINTSSVAGCIGGGAPHAYTISKHGLVGLTKNTAVELGQFGIRVNCVSPYVVATPLLNKYFNLDEEGVREAYSNLKGSYLVPNDVAEAALYLAGDESKFVSGHNLVIDGGFTTTNAGFSVGRSE* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1001 268 PANTHER MOMILACTONE A SYNTHASE 6 262 - -
Pvu11g1001 268 CDD secoisolariciresinol-DH_like_SDR_c 13 256 IPR045309 GO:0016616
Pvu11g1001 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 257 IPR036291 -
Pvu11g1001 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 88 99 IPR002347 -
Pvu11g1001 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 151 IPR002347 -
Pvu11g1001 268 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 182 IPR002347 -
Pvu11g1001 268 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 6 262 - -
Pvu11g1001 268 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Pvu11g1001 268 PRINTS Glucose/ribitol dehydrogenase family signature 88 99 IPR002347 -
Pvu11g1001 268 PRINTS Glucose/ribitol dehydrogenase family signature 137 153 IPR002347 -
Pvu11g1001 268 PRINTS Glucose/ribitol dehydrogenase family signature 163 182 IPR002347 -
Pvu11g1001 268 PRINTS Glucose/ribitol dehydrogenase family signature 184 201 IPR002347 -
Pvu11g1001 268 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Pvu11g1001 268 Pfam Enoyl-(Acyl carrier protein) reductase 23 256 - -
Pvu11g1001 268 Gene3D - 3 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1001 Pvu-Chr11 10039957 10041341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g1001 14 256 Acyl Lipid Metabolism Gene Families AT1G63380 32.296 2.83e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1001 - - gmx:100787995 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1001 11 10039957 10041341 Pvu11g1001 11 10039957 10041341 ECH