Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0943 ATGTCCACTTCAATCCTCTCAGGTCTCAAACCCATTTCCGTTATCACCCTCAACCAAGGTATCCTCAAACCCGCTTTTGAATCCTTAACCCTCCTTTCTTCTCACCCACTCACGTCCCCCTCGCGTCTCGAACACGCGCATCCTCTCCTCCTTGACTTCTGCACCACTGAGAAAGCCCTTCCAAAAGCCACCAAGCTCGTTCATATGTACGGAAAATGTGGAAAATGTGGCTCTTTGCTCGATGCACTCAAAGTGTTCGATGAGATAACTGAGAGAACTATTTTTACCTGGAATGCCATGATGGGTGCGTTTGTGTCAAGTGGGAAATACCTCGCAGCAATTGAGTTGTACAGAGAGATGAAAGCCCTTGGTGTGGCGCTAGATTCTTGTACTTTTCCCTCTGTGCTTAAAGCGTGTGGTGCTCTTGGTGAAACCCGCTCAGGGGTTGAAATTCATGGTGTGGCTATTAAGAGTGGATATGGTGAAGTTGTGTTTGTGTGTAATGCGCATATAAGTATGTATGCCAAGTGTGGTGATCTTGATGGGGCTAGGGTGCTGTTCGATGGGATTATGATGGAGAAAGAGGACACTGTTTCTTGGAATTTTATTATTTCGGCACATGTAGCAGAAGGAAAATGTTTGGAGGCATTGTCGCTTTTTAGAAAAATGCAGGAGGTTGGTGTCGAGAGTAATACATATACTTTTGTTGCAGCTCTTCAAGGTTGTGAGGATCCCTCGTTTGTTAAACTGGGTATGGAAATTCATGGTTTCGTGGTCGAATGGAGGATTCTTGTTAAACTTGATTGCCGCATCTGGCCGATTGGGAAATTTATTGAAAGGGAAGATCTGATTTCTTGGACAACTGTTATTGCTGGATATGCACAGAATGAATGCCATCTGGAAGCAATGAATTTGTTCCGGATGGTTCAGGTGGATGAGATGGTTGTTGACCCCATGATGATTGGAAGTGTTTTGCAGGCTTGTACCCAGTTGAAATCTAAAAACTTTGTCAGAGAGATTCATGGTTATGTTTTGAAGAGAGATTTAGCTGATACAGTGCTACAAAATGCCATTGTCAATGTATTCGGAGAGGTTGGACATATAGATTATGCAAGACGTGTATTTGAGTCCATTAAATCCAAAGATATTGTGTCTTGGACAAGTATGATTACCTGCTGTGTTCATAATGAACTTCCAGTTGAAGCTCTTGAACTTTTCTACATTCTAAACCAATTTAAAATTCATCCTGATTCTATAGCTGTCATTACTTTATTAAATGCATGCAGCCATTCAGGGTTAATGGATGAAGGTAAGAGGATTTTCGATATTATGAAATATGAATATCAATTGGAACCATGGCCAGAACATTATGCCTGTATGGTTGATCTCCTCAGCCGTTCCAATTCCCTCGAAGAGGCTCATCGTTTTGTGAGAAACATGCCTATCAAACCTACTTCTGAAGTTTGGTGTGCTCTTGCATTCATTCTAATAAAGAATTGGGAGAGATTGCAGCAAAGAAGCTCTTACAATCGGATACAGAGAATTCAGGAAAATGTGTTGATATCAAACATCTTCGGAGCATATGGAAGATGGAATGATGTTGAAGAAGTGAGGTTGAGAATGAAGGGAAAGAAGAAGACACCAGCAGGATGCAGTTGGATTGAGGTAGAAAATAAGATTCATACCTTCATGGCAAGGGACAAGTCTCATCCAAAGTCTGATGATATTTGTCTAAAACTAGCTCAGTTTACAAAACTTCTGGGAAAAGGAGGGTATAGGGCTCAAACGAAGTTTGTGTTCCACAATGTTAGTGAAGAAGAGAAAACACATATGTTATACAGACATAGTGAAAGGTTGGCCCTTGATTATGGTCTGCTTGTTACACCAAACAGTACTTTCATTCGAATCACAAAAAACCTTCGAATTTGTGATGATTGTCATGCATTCTTTAAGATAGCATCAAAAGTCTCCCAAAGGACCCTTGTTGTAAGGGATGCCAATAGGTTCCATCACTTTGAAAGAGGAATTTGTTCATGTGGAGATTTGTGGTGA 2052 0.4113 MSTSILSGLKPISVITLNQGILKPAFESLTLLSSHPLTSPSRLEHAHPLLLDFCTTEKALPKATKLVHMYGKCGKCGSLLDALKVFDEITERTIFTWNAMMGAFVSSGKYLAAIELYREMKALGVALDSCTFPSVLKACGALGETRSGVEIHGVAIKSGYGEVVFVCNAHISMYAKCGDLDGARVLFDGIMMEKEDTVSWNFIISAHVAEGKCLEALSLFRKMQEVGVESNTYTFVAALQGCEDPSFVKLGMEIHGFVVEWRILVKLDCRIWPIGKFIEREDLISWTTVIAGYAQNECHLEAMNLFRMVQVDEMVVDPMMIGSVLQACTQLKSKNFVREIHGYVLKRDLADTVLQNAIVNVFGEVGHIDYARRVFESIKSKDIVSWTSMITCCVHNELPVEALELFYILNQFKIHPDSIAVITLLNACSHSGLMDEGKRIFDIMKYEYQLEPWPEHYACMVDLLSRSNSLEEAHRFVRNMPIKPTSEVWCALAFILIKNWERLQQRSSYNRIQRIQENVLISNIFGAYGRWNDVEEVRLRMKGKKKTPAGCSWIEVENKIHTFMARDKSHPKSDDICLKLAQFTKLLGKGGYRAQTKFVFHNVSEEEKTHMLYRHSERLALDYGLLVTPNSTFIRITKNLRICDDCHAFFKIASKVSQRTLVVRDANRFHHFERGICSCGDLW* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0943 683 Pfam PPR repeat 384 407 IPR002885 -
Pvu11g0943 683 Pfam PPR repeat 423 445 IPR002885 -
Pvu11g0943 683 Pfam PPR repeat 168 188 IPR002885 -
Pvu11g0943 683 Pfam PPR repeat 284 308 IPR002885 -
Pvu11g0943 683 Pfam DYW family of nucleic acid deaminases 591 683 IPR032867 GO:0008270
Pvu11g0943 683 Pfam PPR repeat family 93 139 IPR002885 -
Pvu11g0943 683 Pfam PPR repeat family 196 242 IPR002885 -
Pvu11g0943 683 Gene3D Tetratricopeptide repeat domain 356 582 IPR011990 GO:0005515
Pvu11g0943 683 Gene3D Tetratricopeptide repeat domain 41 156 IPR011990 GO:0005515
Pvu11g0943 683 Gene3D Tetratricopeptide repeat domain 157 249 IPR011990 GO:0005515
Pvu11g0943 683 Gene3D Tetratricopeptide repeat domain 276 343 IPR011990 GO:0005515
Pvu11g0943 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Pvu11g0943 683 Pfam E+ motif 560 580 IPR046849 -
Pvu11g0943 683 Pfam E motif 519 555 IPR046848 -
Pvu11g0943 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Pvu11g0943 683 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 272 427 - -
Pvu11g0943 683 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 65 158 - -
Pvu11g0943 683 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 419 674 - -
Pvu11g0943 683 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 157 261 - -
Pvu11g0943 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Pvu11g0943 683 PANTHER OS07G0578800 PROTEIN-RELATED 157 261 IPR045215 GO:0003723|GO:0009451
Pvu11g0943 683 PANTHER OS07G0578800 PROTEIN-RELATED 272 427 IPR045215 GO:0003723|GO:0009451
Pvu11g0943 683 PANTHER OS07G0578800 PROTEIN-RELATED 65 158 IPR045215 GO:0003723|GO:0009451
Pvu11g0943 683 PANTHER OS07G0578800 PROTEIN-RELATED 419 674 IPR045215 GO:0003723|GO:0009451
Pvu11g0943 683 TIGRFAM PPR: pentatricopeptide repeat domain 198 231 IPR002885 -
Pvu11g0943 683 TIGRFAM PPR: pentatricopeptide repeat domain 95 128 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0943 Pvu-Chr11 9172837 9175401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0943 78 683 Glycoside Hydrolase AT3G49170 32.445 1.26e-99 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0943 - K22262 pvu:PHAVU_011G091800g 1380.93