Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0936 ATGCGCTCCAAGGATAGAATCGCTTACTTCTACGACGGCGACGTCGGTAGTGTTTACTTTGGGGCGAAGCATCCAATGAAGCCGCACCGGCTTTGCATGACTCATCATCTTGTTCTCTCATATGACCTTCATAAGAAAATGGAGATTTATCGTCCTCACAAGGCTTATCCTGTTGAGCTTGCCCAGTTTCACTCAGCTGATTATGTTGAGTTTTTGCACAGGATTACGCCTGACACTCAGCACTTGTTCTTAAATGAACTGACAAAATATAACCTTGGAGAAGACTGCCCTGTATTTGACAACTTATTTGAATTTTGTCAGATTTATGCTGGCGGAACCATAGATGCTGCACGTCGATTGAACAACCAACTTTGTGATATTGCTATAAACTGGGCTGGTGGACTTCATCATGCCAAGAAATGCGAGGCTTCTGGGTTTTGTTACATCAATGACTTGGTTTTAGGAATCTTGGAGCTTCTTAAATATCATGCCCGTGTTTTGTATATTGATATAGATGTGCACCATGGTGATGGCGTAGAAGAAGCCTTCTACTTCACTGACAGGGTGATGACTGTCAGTTTTCATAAGTATGGAGACCAGTTCTTCCCCGGTACCGGTGATGCTAAGGAAATAGGAGAAAGAGAAGGAAAGTTTTATGCTATAAATGTCCCATTGAAGGATGGAATAGATGACCTTAGCTTCACACGACTTTTCAAGACTATTGTTTCCAAAGTAGTTGAAACATATCAACCTGGTGCAATAGTTCTCCAGTGTGGAGCAGATTCGCTTGCAGGAGATCGCTTGGGTTGCTTCAATCTCTCTATTGATGGTCACTCTGAATGTGTTAGCTTTGTAAAAAGGTTCAATTTGCCATTGCTGGTCACTGGAGGCGGGGGATACACAAAAGAAAATGTTGCTCGATGTTGGACTGTTGAAACAGGAGTTCTTCTAGATACAGAGCTTCCTAATGAGATTCCAGAAAATGATTATATTAAATATTTTGCACCAGAATTCTCTTTGAAGATTCCGAATGGGCAGATAGAAAACTTAAATAGTAAATCATATCTTAGCACCATTAAAATTCAAGTCTTGGAAAATCTTCGTTGCATCCAACATGCTCCTAGTGTACAAATGCAGGAGGTCCCTCCTGACTTCTACATTCCAGATTTCGATGAAGATGAGCAGAACCCTGATGAGCGCATTGATCAGCACACTCAAGACAAGCGCATCCAGCGCGATGATGAATATTATGAAGCTGACAATGACAATGATCAAATGGATGTTTCATGA 1290 0.4147 MRSKDRIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFLNELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDQFFPGTGDAKEIGEREGKFYAINVPLKDGIDDLSFTRLFKTIVSKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVSFVKRFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIKIQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERIDQHTQDKRIQRDDEYYEADNDNDQMDVS* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0936 429 PRINTS Histone deacetylase superfamily signature 133 156 IPR000286 -
Pvu11g0936 429 PRINTS Histone deacetylase superfamily signature 165 180 IPR000286 -
Pvu11g0936 429 PRINTS Histone deacetylase superfamily signature 251 261 IPR000286 -
Pvu11g0936 429 PIRSF HDAC_I_euk 1 429 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 Pfam Histone deacetylase domain 24 313 IPR023801 -
Pvu11g0936 429 PANTHER HISTONE DEACETYLASE 3 426 - -
Pvu11g0936 429 PRINTS Histone deacetylase signature 26 43 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 PRINTS Histone deacetylase signature 59 77 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 PRINTS Histone deacetylase signature 90 107 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 PRINTS Histone deacetylase signature 111 131 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 PRINTS Histone deacetylase signature 152 168 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 PRINTS Histone deacetylase signature 212 225 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 PRINTS Histone deacetylase signature 229 247 IPR003084 GO:0004407|GO:0016575
Pvu11g0936 429 MobiDBLite consensus disorder prediction 397 416 - -
Pvu11g0936 429 Gene3D Histone deacetylase domain 1 382 IPR037138 -
Pvu11g0936 429 SUPERFAMILY Arginase/deacetylase 6 370 IPR023696 -
Pvu11g0936 429 PANTHER HISTONE DEACETYLASE RPD3 3 426 - -
Pvu11g0936 429 MobiDBLite consensus disorder prediction 388 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0936 Pvu-Chr11 9097626 9103680 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0936 K06067 - gmx:100796727 869.766