Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g0927 | ATGTTCCAGAAGCGTTTTCGTCTCCACCTTCTCCCTCTGTCGGAGAAGTACTATCAGTTTCCGCTTCTAGGTAACGCGGTTACGCTGTCCGACGGAGTTCAACAACCCTCAGACGCCACCATAGCCAAACTAGTCCTCGAATCAGACCCACTCACTCTCTCCGAGGCCCTATGCATGCCCACGATCCAATGGGCCCCCGAGCTCGTGAACAGGGTCTTGAAGCGCCTCTGGAACCACGGGCCCAAGGCCCTTCAATTCTTCAAACACCTGGACCGCCACCCTTCCTACATCCACTGCTCCTCGTCGTTCGACCATGCCGTCGACATCGCGGCCCGTATGCACGACTACAACGCGGCATGGGCCTTAGTGGGTCGTATGCGATCCCTCCGCCGCGGGCCAACTCACCGAACGTTCGCCATCCTCGGCGAGCGCTACGCCGCGAACGGAAAACCACACCGCACCGTCAGAACCTTCCTCTCCATGCACGAGCACGGTTGCCGTCAGGACCTGAACTCATTCAACACCGTCCTAGACGTGCTCTGCAAATCGAAGCGCGTGGAAATGGCGCACACCTTGCTCAAGACGTTCAGATCAAGATTCAGACTCGATAGCGTGAGCTACAACATTATCGCAAACGGTTATTGCTTAATCAAACGCACGCCGATGGCATTGCAGGTTCTGAAGGAAATGGTGCAGCGAGGGATAAACCCTACGATGATCACGTACAACACATTGCTGAAAGGGTATTTTCGGAGTAGTCAGATTAAGGAGGCTTGGGAGTTTTACTTGGAGATGAAGAAGAGGAAGTGCGAGATTGATGTTGTGACTTACACGACTGTGATTCACGGGTTTGGGGTAGCGGGTGAGGTTAAGAAATCTCGTAGGGTTTTTGACGAGATGGTGAAGGAGGGTGTGGCTCCTAGTGTCGCCACGTGTAATGCGTTGATTCAGGTTTTGTGTAAGAAGGATAGCGTGGAGAGTGCGGTGGTGGTTTTTGAGGAGATGGTGAGGAAGGGGTTGTGTGTGCCGAATTTAGTTACTTACAACGTTGTAATCAGAGGTTTTTGTCATGTTGGTGACATGGAGAGGGCGTTAGGGTTTATGGGGAGAATGGGGGAGCATGGTTTGAGAGCTTCTGTTCAGACTTATAATGTTGTGATTAGGTACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGATGTTTGGGAAGATGAAGGATGAGCCTTGCTTGCCCAATTTGGATACTTACAATGTTGTTATTAGTGCCATGTTTTTGAGGAAGAAATCGGAGGATTTGGTGGTGGCTGGGAAATTGTTGATGGAGATGGTTGATAGAGGGTTCTTACCGCGGAAGTTTACTTTCAATAGGGTGTTGAATGGACTTGCTATTACTGGGAATCAGGATTTTGCCAAGGAGATTCTGAGAAAGCAGGGCAGGTGTGGCCGTGTTGTTCGGCGTTTGAAATTGTGA | 1476 | 0.5081 | MFQKRFRLHLLPLSEKYYQFPLLGNAVTLSDGVQQPSDATIAKLVLESDPLTLSEALCMPTIQWAPELVNRVLKRLWNHGPKALQFFKHLDRHPSYIHCSSSFDHAVDIAARMHDYNAAWALVGRMRSLRRGPTHRTFAILGERYAANGKPHRTVRTFLSMHEHGCRQDLNSFNTVLDVLCKSKRVEMAHTLLKTFRSRFRLDSVSYNIIANGYCLIKRTPMALQVLKEMVQRGINPTMITYNTLLKGYFRSSQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGEVKKSRRVFDEMVKEGVAPSVATCNALIQVLCKKDSVESAVVVFEEMVRKGLCVPNLVTYNVVIRGFCHVGDMERALGFMGRMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEMFGKMKDEPCLPNLDTYNVVISAMFLRKKSEDLVVAGKLLMEMVDRGFLPRKFTFNRVLNGLAITGNQDFAKEILRKQGRCGRVVRRLKL* | 492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0927 | 491 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 379 | 413 | IPR002885 | - | |
| Pvu11g0927 | 491 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 29 | 491 | - | - | |
| Pvu11g0927 | 491 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 238 | 272 | IPR002885 | - | |
| Pvu11g0927 | 491 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 203 | 237 | IPR002885 | - | |
| Pvu11g0927 | 491 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 308 | 342 | IPR002885 | - | |
| Pvu11g0927 | 491 | Pfam | PPR repeat family | 379 | 425 | IPR002885 | - | |
| Pvu11g0927 | 491 | Pfam | PPR repeat family | 307 | 357 | IPR002885 | - | |
| Pvu11g0927 | 491 | Pfam | PPR repeat family | 237 | 284 | IPR002885 | - | |
| Pvu11g0927 | 491 | Pfam | PPR repeat | 172 | 195 | IPR002885 | - | |
| Pvu11g0927 | 491 | Pfam | PPR repeat | 205 | 235 | IPR002885 | - | |
| Pvu11g0927 | 491 | PANTHER | OS02G0679200 PROTEIN | 29 | 491 | - | - | |
| Pvu11g0927 | 491 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 344 | 378 | IPR002885 | - | |
| Pvu11g0927 | 491 | Gene3D | Tetratricopeptide repeat domain | 53 | 198 | IPR011990 | GO:0005515 | |
| Pvu11g0927 | 491 | Gene3D | Tetratricopeptide repeat domain | 199 | 291 | IPR011990 | GO:0005515 | |
| Pvu11g0927 | 491 | Gene3D | Tetratricopeptide repeat domain | 292 | 409 | IPR011990 | GO:0005515 | |
| Pvu11g0927 | 491 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 273 | 307 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 205 | 238 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 311 | 343 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 240 | 274 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 346 | 378 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 172 | 198 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 275 | 308 | IPR002885 | - | |
| Pvu11g0927 | 491 | TIGRFAM | PPR: pentatricopeptide repeat domain | 382 | 414 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0927 | 133 | 486 | Glycosyltransferase | AT1G05670 | 28.451 | 7.59e-44 | 163 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g0927 | - | - | gmx:100808784 | 825.083 |