Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0916 ATGGGGGTGCTAGGTTATTGTCACGAGGGTTGTTCCACAAATCCAATAGTCTCTGCAAATGAAGTTGAGTACTTGAGAACGTGTAAGCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAGAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGGACAGCTTTGAAGAGATCAAGGCCTAAAACTCTTGATCAAGTACAGAAATCTTCCAAGACAAAGGCTAAATGTTCTGAACAAGAACCAACTACTAGGATAAATGATAATCATCTTGACAAGCAACAAGTCGCTTCTGTGGCCACTTCAGCTGGAAAGCGTCATCGCAAAAACTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGATAGCAATGATTTCAAGCTCAGGAACATACTTTTGAAAGGGAGCTCAAACATACCAGAAGTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATATGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATGTGAAGCCTGAGAGACCAGAGGGCAAAGGCAAAAAGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAAGCTGCTACTCCCGTCTTTCCTGTATATGATGATACTTCCGCCTTTTCTGTGGAGGATCCTAGTTCTGTCTTTCCTGATGAGGATGATCCTCTTCTTTTCTCTCTCTCAAGTGTTGAACTGATAACAGAACCTAAGATTGATGAGGATATTGAGTGGAACAGTGTCAATGTCTCTGGGCCAGGGCTTCAGAAACTGGCAGTGAGAAGGAATGTTAAGAATGAGGGTGATGATGATTCTTTTGGAGGTGTACCTTTGGATGCTGAATTCTCTACCTACGGTGGAGAGGCAGGTAATCTGTCCAATCCTGCAGAGGAATCTACATCTTTAGAATATGCCTCTGGTGTTGACATAGACAACCAGCTGCCCAATGACTCTCAAAATGTAAATTACGATGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTAACAGAACTGCTACAGTCAGATGATGGTGGTCAGTTTGAGGGAGTTGATATGTCTGGGGACTTGTCAGGATATATGGCGGCAGATAAATCAGAACCTACAACTTACACCGGCTATAGTTGTATGCAATGTTCGCAGATGGAACCAGCCCCTGATCTCCGTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAATTACCATCGATTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATATGGTAATAACTGA 1455 0.422 MGVLGYCHEGCSTNPIVSANEVEYLRTCKQCYHARLLAQKENSNESPTSPLLLRGRENNSGTALKRSRPKTLDQVQKSSKTKAKCSEQEPTTRINDNHLDKQQVASVATSAGKRHRKNCSWGIIWKKKNNEDSNDFKLRNILLKGSSNIPEVKPVCHLCRKPYMSDLMYICCETCQNWYHAEAVELEESKLSSVLGFKCCKCRRIKSPVCPYSDVKPERPEGKGKKSRTKAKKEHSGADTDSGAISDMRECEAATPVFPVYDDTSAFSVEDPSSVFPDEDDPLLFSLSSVELITEPKIDEDIEWNSVNVSGPGLQKLAVRRNVKNEGDDDSFGGVPLDAEFSTYGGEAGNLSNPAEESTSLEYASGVDIDNQLPNDSQNVNYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSGDLSGYMAADKSEPTTYTGYSCMQCSQMEPAPDLRCEICGILIHSQCSPWVELPSIGSWRCGHCREYGNN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0916 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 216 IPR013083 -
Pvu11g0916 484 SUPERFAMILY FYVE/PHD zinc finger 151 209 IPR011011 -
Pvu11g0916 484 MobiDBLite consensus disorder prediction 216 240 - -
Pvu11g0916 484 MobiDBLite consensus disorder prediction 70 96 - -
Pvu11g0916 484 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 5 479 - -
Pvu11g0916 484 PANTHER PHD FINGER FAMILY PROTEIN 5 479 - -
Pvu11g0916 484 MobiDBLite consensus disorder prediction 40 69 - -
Pvu11g0916 484 MobiDBLite consensus disorder prediction 215 245 - -
Pvu11g0916 484 MobiDBLite consensus disorder prediction 40 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0916 Pvu-Chr11 8706789 8708964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0916 5 481 EF-hand Containing Proteins AT5G22760 38.833 7.65e-89 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0916 - - pvu:PHAVU_011G089200g 1005.36