Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0905 ATGGCTCCGTTTCCGTCTGAGAACGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGAAGAAGAGGAAGAAGAAGTGGAAGATGAAGAAGAGGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGACGCCGCGTCGTGTATTGCCGTCGCCGAACGGATGATCGCTCTCGGCACACACGGCGGCACCGTTCACATCCTTGATTTTCTCGGGAATCAGGTTAAGGAATACTCTGCACATGCTTCTGTTGTCAACGACCTTAGTTTTGACACAGAAGGTGAATATATTGGAAGCTGTTCTGATGACGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTAAAGTTTGAGTACCATCGGCCAATGAAGGCAGTTGCGTTGGATCCAGATTATGCAAGGAAAATGTCCAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTGGGCTACCGCGATCAGGTTTTGCACTCTGCTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCAAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTTACATTTATTGAAAAACCACGAGGAAGCCCACGCCCCGAGCTTTTACTTCCTCACCTGGTCTGGCAGGATGATACCCTCTTGGTTATTGGATGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAAATCACCAAAGGGCAGCGAATGGGTCATTCAGGCAAGTTCCTCTTTCTGGTGTGGTCCAGGTGGACATTGTGGCATCTTTCCAAACCAGCTACTTCATCTCAGGGCTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTTGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCTCTGCTCATTCACGGCAGGGCAATGCTCAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTGCCAGTACATGGGTTTGAGCATTACAGGGCGAAAGACTATTCTCTTGCACATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCATTGGCTGTGGTTGAATCTGGTCAGGGACGAAGTGAACTGCTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGGAAATACAGTGAAGCGGCATCTTTGTGTCCCAAGTTGCTTCGGCGATCAGCTCCAGCTTGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCTTCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATAGAACCTCAGCTAAATACTTCGTCCATGACTGATTCACTTAAGGAGGCATTGGCAGAGTTGTATGTAATCAATGGGCAATATGAGAAGGCCTTCTCTTTGTATGCTGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACATGATGCAATTCGTGGAAAGGTTGTTCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCTTTGTTGATCCAAAATAGGGACTTAATAAGTCCACCTGAAGCTGTGAAGCAACTTCTAAATGCTGATAATAAGTGTGATCGTAGATATTTTTTACATTTGTATCTCCATTCATTATTTGAAGTAAATCATCATGCTGGGAAAGATTTCCATGACATGCAGGTAGAACTCTACGCAGAGTATGATCCAAAGATGCTACTACCTTTTCTTCGTAGCAGTCAACATTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGGGACCTATTGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACTCAAAACAAGCCCTAGCTGTTATTATAAACAATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTGATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTCGATCCCCTTTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGGCATGGGTGCAATGATATTCTTAAGGCGGACTGTGTCAATCTTTTAATCAAGTATTACAAAGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGCCACGGGTTAAAATGAGTGACGCTCGTGCTTCTCAGGTATTTGAGAAATCCCCGAGTCTAAGAACTATGGAGATGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAAATTGTCTCATGGATTCCTCTTACACTAGTAGTAAAAAGAAACAAACCACGTCCCTAGAGAAAGAAATGTATGATGATTACAATGGTTATGAGGACGATGCTAACGAAGACTCTGAAGATGAAGAAACCACGTCGCGTGGCCCTCGAATGCGCTGTATATTGTGTACTACTGCTGCTAGTTGA 2871 0.4333 MAPFPSENGVEGDDEREEEDEEEEEEEEEVEDEEEEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEYSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSAEGSIHAVKWRASLVAWANDAGVKVYDTANDQRVTFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHQRAANGSFRQVPLSGVVQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSSAHSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRRSAPAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVINGQYEKAFSLYADLMKPEVFDFIDKHNLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPPEAVKQLLNADNKCDRRYFLHLYLHSLFEVNHHAGKDFHDMQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINNLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGVSLGNEEDEPRVKMSDARASQVFEKSPSLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTNCLMDSSYTSSKKKQTTSLEKEMYDDYNGYEDDANEDSEDEETTSRGPRMRCILCTTAAS* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0905 956 Coils Coil 13 38 - -
Pvu11g0905 956 PIRSF Vps41 1 913 IPR016902 GO:0034058|GO:0046907
Pvu11g0905 956 PIRSF Vps41 901 946 IPR016902 GO:0034058|GO:0046907
Pvu11g0905 956 MobiDBLite consensus disorder prediction 922 936 - -
Pvu11g0905 956 MobiDBLite consensus disorder prediction 1 42 - -
Pvu11g0905 956 MobiDBLite consensus disorder prediction 918 944 - -
Pvu11g0905 956 MobiDBLite consensus disorder prediction 11 37 - -
Pvu11g0905 956 Gene3D - 8 279 IPR015943 GO:0005515
Pvu11g0905 956 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 955 IPR045111 GO:0006623
Pvu11g0905 956 SUPERFAMILY RING/U-box 864 908 - -
Pvu11g0905 956 SUPERFAMILY WD40 repeat-like 56 249 IPR036322 GO:0005515
Pvu11g0905 956 SMART ring_2 871 951 IPR001841 -
Pvu11g0905 956 SMART WD40_4 84 123 IPR001680 GO:0005515
Pvu11g0905 956 SMART WD40_4 172 208 IPR001680 GO:0005515
Pvu11g0905 956 Gene3D Tetratricopeptide repeat domain 549 819 IPR011990 GO:0005515
Pvu11g0905 956 SMART CLH_2 610 757 IPR000547 GO:0006886|GO:0016192
Pvu11g0905 956 Pfam Region in Clathrin and VPS 611 753 IPR000547 GO:0006886|GO:0016192
Pvu11g0905 956 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 610 757 IPR000547 GO:0006886|GO:0016192
Pvu11g0905 956 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 955 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0905 K20184 - gmx:100804340 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0905 11 8551265 8563692 Pvu11g0905 11 8551265 8563692 ECH