LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0904	ATGCAGCCGAACTTGTTTCCCTTTGGAAGCGTGCTGGGGAATCCGTTCATTTTCAATGGTGATTTGAGTGAGGGAGGAATCGATAGCTCTAGGGTTTTCTTCTTGCTACCGTTCTTCTTGCTCTCCCAGGGAGGAGCAATGGATTTGTCCAAGGTCGGAGAAAAAATCTTGAGCTCCGTTAGGTCCGCGAGATCTATCGGATTGCTCCCTCCAGTTCCTGATCGTCCCGAGGTTCCAGCTCGAGCTGCAGCAGCTGCTGCTGTAGCTCGTGCTCTTGCAGGGTTACCTCCTCATCAGAGATATAGTTTTTCATCAAGTTCAGAAGAACTGAGTTCCATATATGGAAGCAGACCTCAAGGCCAAATAGTGGAGGAGCTGGAGGATGAATTCTATGAAGAGGACTTTGATCCAATTAAGCATATTTTAGAGCATGTTCCAGCTGATGAGAGTGAGCTAACATATTTTGAAAAACAGGCTGCCCTTAGATTGGTACAACTTGATAAAGTGGCGGAACATTTATCTCGCCATGTTATGGAGCATCATGAAGTAATGGTGAAGGGGATGAATTTGGTCAGAGAATTGGAAAAAGACTTAAGAATTGCAAACGTCATCTGTATGAATGGAAGAAGACACCTGACATCGTCTATGAATGAGGTTTCAAGGGATCTGATAGTGAATTCTTATTCCAAAAAGAAACAGGCTCTTCTGGACATGCTTCCAACCTTGCTTGAACTTCAACGTGCTTTGGACATGCAATCAACACTTGAATCCCTTGTAGAGGAAGGGAATTATTGGAAGGCATTTCAAGTTCTATCTGAGTATTTGCAACTCTTAGATAGTTTGTCAGAGCTTTCAGCAATACAAGAAATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACTTTGCAGAAGCTGGATGCTCTTTTATTGGGAGTATGTCAAGAATTCAAGGAGGATGGCTATATAACAGTAATTGATGCATATGCATTAATAGGGGATACTGCTGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAGAAACACACTCTGTATTAAAGGCTGTTGTGCATGAGGACGAGGAGGACCTTTTGCAAAATAGTAGGCTCACTTACAGCGATCTATGCCTCAGAATACCTGATTCAAAGTTCAGGCAATGCTTATTAAGAACTCTGGCTGTTCTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTCCAGCTAGAAAGAAAGGACACAGTAGAAAATTCAAATAAGTGCAATGAAGAAATTTCCTGTAGTCCAGGTGAGGCTCAGGAAGTTGATTCAGATGCAAGAGCCTGCAATAATTCTTTGTCCAGTTCTGGAGATATATTACATGGTTCATCTTCTAGGGAGGAATCTGCAACAATGAGCTCACTGACTGAAACTAGTGGTTCAGCATACAGTGATTCTCCTGATCCAATTAAGGAGGCTGGAAAGGAGGACAGTGCAACATTAAGCAATGAATCCCCTTGGTACCATCTTCGCAAAGAAGCTACAACATTTGTGTCACAGACCCTTCAGAGAGGGCGAAGGAATTTGTGGCATCTCACTGCAAGTCGCGTGTCAGTTTTGCTTTCTTCTGCTGCAGTTTGTACTGCTAGCATTCATCAATTCTTGAAAAATTATGAAGAACTCAGTGTCTTTATTTTGACTGGGGAAGCCTTTTGTGGAATTGAAGCAGTTGAATTTAGGCAGAAGTTAAAGGCTGTTTGTGAAAACTATTTCACAGCTTTTCATCGGCAAAATGTGCATGCACTAAAAATGGTTTTGGAGAAAGAGACTTGGCTAAAATTACCTCTAGAAACAGTACAAATGATCAGTTTTGCAGGACTTATTGGTGATGGTGCACCCTTGATTTCTTTAACCAGTGGCAAATCAATTAATGTCGGCGCATTTCATTCCCATAAATCCGTGAATATGGTTCATACTGGTGCAAGGAAAAATGGGTTTTCTCACTGGATCAAAAGTGGAAACCCTTTCTTGCAAAAATTACCAACCTCCAATGAAGGTCATGGTTGCTCCCAACCTAATGGATCAGTTCGTGGTGAATCTGATGGAAGTTCAACCAAATACTTTTATGATGATAGAACACCCAGAAAGAACGATTCCAATCACATAAATGGTGCCAATTCTGTTTCAGAAGATGAAAATGAGGATCTTCTTGCTGACTTCATTGATGAAGACAGCCAACTACCAAGTCGAAGTTCTCAACCCCATCATTCAAGAACTTTTTCTTCACATGCTAATGATGAAGAGAATACAACACAAACTGGATCTTCTCTGTGTCTTTTAAAGTCTATGGATAAATATGCAAGGCTTATGCAGAAATTGGAATTGGTAAATGTTGAGTTCTTTAAGGGAATATGCCAATTGTTTGAAATATTTTTCTATAATATATATGAAACATTTGGTCAGCAAAACGCTAGTTCAAGTGGAAAAAGCTCAACTAACTCTCTTAATTATCGCTTGAGAACAGCTTTATCGAGAGTAAACCAAGATTGTGAAGAGTGGATTAAATCTCAATTGTCTTCACCAACATCTTTGACAGAGTTGACTCCTACAAACCCACCCAATGCGAATTTTGGTCATTCCTCAGGGACTTCTTTGGGTCTAACGGAAAGATGCGTGGCTGTTGACACTATATCTCTTGTTGCTCGAATACTGAATAGATCTAAAGCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACCATACTCGAGGATTTCTACGTTCATTTGGTGGATGCTGTACCAGATCTTACAGAACATGTTCACCGGACTACAGTGAGGTTATTGTTGCACATTAATGGATATGTTGATCGTGTTGCCAACTGTAAATGGGAATTAAAAGAGCTTGGCATGGAGCATAATGGATACGTTGATTTGTTGCTGGGGGAGTTTAAGCATTATAAAACAAGACTTGCTCATGGAGGAATTCGTAAAGAGATTCAAGGCCTATTATTGGATTATGGGCTTGAAATTGTGGCAGAAACTCTTGTTGAAGGACTTTCAAGGGTGAAGAGATGTAGTGATGAAGGACGAGCTCTTATGTCGTTAGATCTTCAGGTTTTGATTAATGGATTACAGCATTTTGTGTCGCTGAATGTGAAGCCCAAGCTTCAAATGGTTGAAACTTTCATCAAGGCTTACTACCTTCCTGAGACAGAATATGTGCACTGGGCTCGAGCACACCCAGAATACAGTAAAAGCCAGATTATTGGACTGATCAACCTTGTTGCCACTATGAAGGGTTGGAAGAGGAAAACCAGGTTGGATATACTGGAAAAGATTGAATGA	3342	0.4066	MQPNLFPFGSVLGNPFIFNGDLSEGGIDSSRVFFLLPFFLLSQGGAMDLSKVGEKILSSVRSARSIGLLPPVPDRPEVPARAAAAAAVARALAGLPPHQRYSFSSSSEELSSIYGSRPQGQIVEELEDEFYEEDFDPIKHILEHVPADESELTYFEKQAALRLVQLDKVAEHLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALLDMLPTLLELQRALDMQSTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLGVCQEFKEDGYITVIDAYALIGDTAGLAEKIQSFFMQEVISETHSVLKAVVHEDEEDLLQNSRLTYSDLCLRIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLERKDTVENSNKCNEEISCSPGEAQEVDSDARACNNSLSSSGDILHGSSSREESATMSSLTETSGSAYSDSPDPIKEAGKEDSATLSNESPWYHLRKEATTFVSQTLQRGRRNLWHLTASRVSVLLSSAAVCTASIHQFLKNYEELSVFILTGEAFCGIEAVEFRQKLKAVCENYFTAFHRQNVHALKMVLEKETWLKLPLETVQMISFAGLIGDGAPLISLTSGKSINVGAFHSHKSVNMVHTGARKNGFSHWIKSGNPFLQKLPTSNEGHGCSQPNGSVRGESDGSSTKYFYDDRTPRKNDSNHINGANSVSEDENEDLLADFIDEDSQLPSRSSQPHHSRTFSSHANDEENTTQTGSSLCLLKSMDKYARLMQKLELVNVEFFKGICQLFEIFFYNIYETFGQQNASSSGKSSTNSLNYRLRTALSRVNQDCEEWIKSQLSSPTSLTELTPTNPPNANFGHSSGTSLGLTERCVAVDTISLVARILNRSKAHLQSMLLQSNSTILEDFYVHLVDAVPDLTEHVHRTTVRLLLHINGYVDRVANCKWELKELGMEHNGYVDLLLGEFKHYKTRLAHGGIRKEIQGLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVSLNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIIGLINLVATMKGWKRKTRLDILEKIE*	1114

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0904	1113	MobiDBLite	consensus disorder prediction	456	483	-	-
	Pvu11g0904	1113	Pfam	Vacuolar-sorting protein 54, of GARP complex	123	412	IPR019515	-
	Pvu11g0904	1113	MobiDBLite	consensus disorder prediction	702	716	-	-
	Pvu11g0904	1113	MobiDBLite	consensus disorder prediction	744	771	-	-
	Pvu11g0904	1113	Pfam	Protein of unknown function C-terminus (DUF2451)	883	1113	IPR019514	-
	Pvu11g0904	1113	MobiDBLite	consensus disorder prediction	678	700	-	-
	Pvu11g0904	1113	PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED	5	1113	-	-
	Pvu11g0904	1113	MobiDBLite	consensus disorder prediction	456	497	-	-
	Pvu11g0904	1113	MobiDBLite	consensus disorder prediction	678	727	-	-
	Pvu11g0904	1113	PANTHER	UNCHARACTERIZED	5	1113	IPR040047	GO:0032456\|GO:0042147\|GO:1990745

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0904	K23288		-	gmx:100788476	1925.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu11g0904	11	8513127	8537308	Pvu11g0904	11	8513127	8537308	ECH