LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0886	ATGCATCTAGCAATGGCAGCCAACGCTGTTGTCGCTCCGTCGCCGTTCCAACCCAGTTCACTTCTCCGCTCACCATTCTCCGGCGTCTCCGTTAAGCTCACTCCCCAATCCCTAACCCTTTCGCGCTCGAAGACCCTCACTGTCCTCGCCGCCACCAAGAAGGCCGTTGCCGTCCTCAAGGGCAACTCCGCCGTCGAAGGCGTCGCCACCCTAACACAAGAAGATGATGGCCCAACAACGGTCAGTGTTCGCATTACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTACATGAGTATGGTGATACCACAAATGGGTGTATTTCAACAGGACCGCATTTTAATCCTAACAAGTTGACACATGGTGCTCCGGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGGTTGCAGAGGTTTCAATTGTGGATAATCAGATACCACTCGCTGGCCCCAATTCAGTGATTGGAAGAGCCTTGGTGGTTCATGAGCTTGAGGATGACCTTGGAAAGGGGGGTCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGCTTGGTTTGACTCCAGCATAA	615	0.522	MHLAMAANAVVAPSPFQPSSLLRSPFSGVSVKLTPQSLTLSRSKTLTVLAATKKAVAVLKGNSAVEGVATLTQEDDGPTTVSVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNKLTHGAPEDEVRHAGDLGNIVANADGVAEVSIVDNQIPLAGPNSVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVLGLTPA*	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu11g0886	204	CDD	Cu-Zn_Superoxide_Dismutase	53	196	IPR001424	GO:0006801\|GO:0046872
	Pvu11g0886	204	Gene3D	Superoxide dismutase, copper/zinc binding domain	49	203	IPR036423	GO:0006801\|GO:0046872
	Pvu11g0886	204	ProSitePatterns	Copper/Zinc superoxide dismutase signature 1.	94	104	IPR018152	-
	Pvu11g0886	204	PANTHER	SUPEROXIDE DISMUTASE CU-ZN -RELATED	51	202	IPR024134	-
	Pvu11g0886	204	SUPERFAMILY	Cu,Zn superoxide dismutase-like	54	201	IPR036423	GO:0006801\|GO:0046872
	Pvu11g0886	204	Pfam	Copper/zinc superoxide dismutase (SODC)	65	198	IPR001424	GO:0006801\|GO:0046872
	Pvu11g0886	204	PANTHER	SUPEROXIDE DISMUTASE [CU-ZN] 1	51	202	-	-
	Pvu11g0886	204	PRINTS	Cu-Zn-superoxide dismutase family signature	94	116	IPR001424	GO:0006801\|GO:0046872
	Pvu11g0886	204	PRINTS	Cu-Zn-superoxide dismutase family signature	130	139	IPR001424	GO:0006801\|GO:0046872
	Pvu11g0886	204	PRINTS	Cu-Zn-superoxide dismutase family signature	149	171	IPR001424	GO:0006801\|GO:0046872
	Pvu11g0886	204	PRINTS	Cu-Zn-superoxide dismutase family signature	174	200	IPR001424	GO:0006801\|GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0886	Pvu-Chr11	8317269	8322335	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0886	K04565		-	gmx:100815376	367.081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu11g0886	11	8317269	8322335	Pvu11g0886	11	8317269	8322335	ECH