Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0750 ATGTTTTCTTTCCCAAGAAATTGCTTCAAATATTGTGCCTCCTTCTTCAGGAGGAATGTTCCAAATGAAACCATACTCTCCACACTCTCATTTTGCCACAAATTTCAGGACCCCAATGAGAAAAATTTACACAAGATATGTTTTTCTAATCACACCCACAAATTTGACCGCTTTTTATTCCAAATAAACACTAGTTACACTCAATTTCCTGTCCCATTTGCACCCTTTAGTTTTTCCTATTCAACAAAGGCTCCTTCGAGATCTTACCGAAGGCGAGCCCGAAATAGGTTGTTGAAGTCCTCCAAGCCTACCCTAGACCAAGCCCAATTTCAGTTGGCACTGTCCCAACTTCCTCCAAGGTTCACTACTGAAGAACTCTGCAGTGTGATTTCTCAACAAGATCATCCCCTGGTTTGCTTAGAACTGTTTCACTGGGCATCTCAGCAGCCACGGTTTCGGCATGACGTGTCCACGTACCATGTCACCATAAAGAAGCTTGGTGCTGCAAAGATGTTCCAAGAAATGGATGACATCGTGAACCAACTGCTTGCAGTTCCATTAATTGGTTCAGAGGCATTGTTCAACACGGTTATATATTATTTCACCCAGGCGCGGAAGCTGACTAGAGCTGTCAATGTGTTTAAGCACATGAAAAGTGGGAGGAATTTAGTTTCCTGTTATAGGCCTTCTATTAGAACCTATAATATTCTTTTTGCTGCATTTTTGGGTAGAGGAAGCAACTCCTATATAAATCATGTGTATATGGAAACAATTAGGTGTCTGTTTAGGCAAATGGTCAATGATGGGATCAAGCCTGATATTTTTTCATTGAATTCTATGATCAAAGGTTATGTGTTATCTCTTCATGTTAATGATGCATTGAGAATATTTCATCAGATGGGTGTGGTTTATGATTGCCAGCCCAATGCGTTGACATATGATTGCTTGGTTTACGGCTTGTGTGCCCAGGGAAGAACAAATAATGCCAAAGAATTATGTTATGAAATGAAGACCAAGGGTTATGTTCCTGGTAGTAAATCTTATAATTCACTTGTCAACTCTTTGGCACTTGGTGGAGAGATTGAGGAAGCAGTAAATTATCTGTGGGAGATGACTGATAAGCAAAGGTCAGCTGATTTCATTACATATAGGACTGTACTGGATGAGATATGTAGACGTGGAACAATTCAGGAGGGCAAGAGCTTTTTGCAGTTGTTACAAGAAAAGGACCTTGTAGATGGGCATGCTTACAGGAAGCTTCTATATGTGCTTGAAGATGACTATGGGGATTCAGTAAGCAGAAACATGGGAACTCAGTGA 1320 0.4053 MFSFPRNCFKYCASFFRRNVPNETILSTLSFCHKFQDPNEKNLHKICFSNHTHKFDRFLFQINTSYTQFPVPFAPFSFSYSTKAPSRSYRRRARNRLLKSSKPTLDQAQFQLALSQLPPRFTTEELCSVISQQDHPLVCLELFHWASQQPRFRHDVSTYHVTIKKLGAAKMFQEMDDIVNQLLAVPLIGSEALFNTVIYYFTQARKLTRAVNVFKHMKSGRNLVSCYRPSIRTYNILFAAFLGRGSNSYINHVYMETIRCLFRQMVNDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYDCQPNALTYDCLVYGLCAQGRTNNAKELCYEMKTKGYVPGSKSYNSLVNSLALGGEIEEAVNYLWEMTDKQRSADFITYRTVLDEICRRGTIQEGKSFLQLLQEKDLVDGHAYRKLLYVLEDDYGDSVSRNMGTQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0750 439 Gene3D Tetratricopeptide repeat domain 91 257 IPR011990 GO:0005515
Pvu11g0750 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Pvu11g0750 439 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 8 436 - -
Pvu11g0750 439 Pfam PPR repeat family 272 321 IPR002885 -
Pvu11g0750 439 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Pvu11g0750 439 TIGRFAM PPR: pentatricopeptide repeat domain 312 344 IPR002885 -
Pvu11g0750 439 PANTHER ATPASE EXPRESSION PROTEIN 3 8 436 - -
Pvu11g0750 439 Gene3D Tetratricopeptide repeat domain 287 411 IPR011990 GO:0005515
Pvu11g0750 439 Pfam PPR repeat 194 219 IPR002885 -
Pvu11g0750 439 Pfam PPR repeat 347 374 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0750 174 411 Glycosyltransferase AT1G05670 29.412 1.12e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0750 - - var:108340576 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0750 11 6576724 6578043 Pvu11g0750 11 6576724 6578043 ECH