Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0719 ATGAATAGGGGGAGAACGGAAGGCATAACCTTTACGAAGGAACCTTTCATGGAGGATGCAGGGCCTCGTAAGATAAAGAACATGAAGTTCTCCATGTTATCAGATTCGGAAATAAGCAAACTTGGTGAAGTTCAAGTGTGGAAAGGTTCCTACTATGATTCTTTTAAGAAACCTATCCATGGTGGCTTGTTGGATCCTCGCATGGGTCCTGCTAACAAGAGTCTTGGCTGTGCTACATGCCATGGGAATTTTCATGACTGTCCAGGGCACTATGGATACTTAAACCTTGCCCTTCCTGTATTCAATGTTGGATATTTAGGTAGCATTGTGGAAATACTGAAGTGCATTTGTAAGGGCTGTGCTCGAATTCTCCTTGATGAAGATACCCGTAAAAAACATTTGAAGAAAATGAGAAGTTCCAAAAAGAGTGAGCTGGATAAGATGGATTTTGTGAAAGTTCGTATAATTAAAGATTGTAGCAAAGTTGTGAATTGCCCTAGATGCGGATATATCAACGGTTCAGTAAAGAAGCTTCCGGCTTCACTGATTATCATGCATGATTGTTCAAAATGTAAAAATAATATTGTTGAAGAGCTTGAATCCACACTTTCTCGTATAAAAGACTCTAAGGCGACTGCCAATGTGTCTAATCGAATTCTTAATCCTTTCCAAGTTCTTTCGTTGTTTAGAAAGATGCTTGACGAGGACTGTGAATTACTCTATGTAGCTGAAAGACCAGAGAAACTCATAATAACAAACATTGTTGTGCCACCTATAGCTATTCGACCTTCAGTTGTAATGGATGAATCACTGAGCAATGAAAATGACATAACTGAGAGGCTAAAGAACATAATCCAAGCAAATGCTGTTCTGCGCCAGGAATTACAAGAATCAAGTGTTTCATCCAAATTTCTGGATGGTTGGGAAATTCTTCAAAATGAAGTTGCTCAATTCATAAATAGTGAGGTTCGTGGTATACCATTCTATATGCAATCGACCAAGCAATTGGCTGGTTTTGTTCAGCGCTTGAAAGGTAAGCATGGACGTTTCCGTGGCAACTTATCTGGAAAACGTGTTGAATATACAGGAAGAACAGTTATTTCTCCGGATCCTAATCTGAAGATTTCTGAGGTTGCAATACCTATCCTTATGGCTAGCATACTGACTTATCCTGAGCGTGTTACGCATCACAACATAGAGAAGTTGAGACAGTGTGTGAGAAATGGTCCTGATAAGTATCCTGGGGCGAGAATGCTTAGACGTGATGGAGGCCACTCATGGTCCTTAAAAGTTCTTTGTAGGAAACGTGCTGCAGATGAATTGAGGATTGGTGATATTGTTGATCGCCATTTAGAAGATGGAGACATTGTTCTTTTCAATAGACAACCAAGCTTACATCGGATGTCTATAATGAGCCACAGGGCAAGGATTATGCCTTGGAGAACTTTAAGATTCAATGAATCTGTATGTAACCCATATAATGCTGACTTTGATGGTGATGAGATGAACTTACATGTCCCACAAACTGAGGAGGCTCGGACAGAGGCTATTTTGTTGATGGGGGTGCAAAACAATTTATGCACACCAAAAAATGGCGAGATTCTGGTTGCTTCTACGCAAGACTTTTTAACCTCTTCTTTTCTCGTAACCAGAAAAGATACTTTTTATGACCGGTCTGCTTTTACAAATATTTGCACTTTCATAGGTGATGGCTTGGATCTTATTGATTTGCCAACTCCTGCAATTGTTAAGCCTGTTGAGCTTTGGAGTGGTAAGCAGTTATTTAGCCTTCTACTGCGCCCACATGCAAATTTTAAAGTCTATGTGAATCTTACTGTTAAGGAGAAAACATACACAAAGCTTGATGACAAGAAAAGAGAATTGAAAACATTGTGCCCAAATGACGGGTTTGTTTATTTTCGTAATACTGAGTTGATCTCCGGCCAAATTGGAAAGGTTACTTTAGGAAATGGCAATAAGGATGGACTGTTCTCTGTGCTACTACGAGACTATAAAGCACATGCAGCTGCGTCTTGCATGAATCGTTTAGCTAAATTGAGTGCGCGGTGGATTGGTAATCATGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGATACTGATTAAGAAGAAAGATGAAACACTTTCAGAAGGTTATAAGAAATGTGATAATCACATACAAGCTTTCAATAAAGGAAAACTAGAACTCTTAGCTGGTTGTGATGCTCCTCAAACATTAGAGACTCAGATTACTGGGGTATTAAATGGACTCCGTGATATGGCAGGGAAGGTTTGCATGCAGACCCTGCACTGGAGAAATAGTCCATTGATCATGTCGCAGTGTGGATCCAAAGGATCTCCTATTAATATCAGTCAAATGGTTGCTTGTGTTGGTCAACAGTCTGTTGGTGGTCGTCGTGCACCTAATGGGTTCCTAGATCGGAGCCTTCCTCATTTCCCTCTAAATGCAAAGACCCCTGCTGCTAAAGGTTTTGTTGCTAATTCATTTTACAGTGGATTGTCAGCCACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACAGGATATATGTCTCGTCAATTAATGAAATCCATGGAGGATTTGTTTTTACATTATGATTACACTGTGAGAAACGCAGGGGGTTCTATTGTTCAATTTTGCTATGGAGATGATGGCATGGATCCAGGAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGAGCGGTTGTTTCTTAAAAGCAAGGCCATATGTCCCAATAAGGACGATGATGAAGTTTTATCTTCCTCAGATGTGTGCAAAGTAGTTCAAGAGAAGCTGTCAGAATTTGGTGTGTCTAGGGAAGTTGAAAAAGGGGTTTTAGAGGTGGGATTCTCTGCAGATTTTGTACAGTCTCTACAGTCCTTTATTAAAGATAATACAAAATTAACAGAAGAAACTTTCACTGATGACAATTCCCAAATCCTGAAAAAATTTGGGGAGAGGATATCTGGGATCACTCGTGCACAACTAGAGGTTTTTTTGAATATTTGTCTATCTCGTTATCATTCAAAAAAAATTGAGGCTGGAGCTCCTGTTGGTGCAACTGGAGCTCATAGTATTGGGGAGCCTGGGACCCAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAACGTCACTCTTGGAGTTCCACGTGTCAAAGAAATTATGAATGGAAACAAAAAGATCAGTACACCAATTATCACTGCAATACTTGAGAGAACTGACTGTGCAAATACTGCAAGAATAGTTAAAGGTCGAATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATAAAAGTTGTTGTGACTTCAAGATTAGCGTCAGTTGTTATCACCCTTGACATGGAAAGAATCCAGGATGCACATCTAAATATAGATGCTAATATTGTTAAAGAATCAATTTTACAAACTAAAAAGGCGAAACTGAAGCCAGAGCACATCAAGATTTTAGATGTGAAAAAGCTTCGAGTTGTTCCCCAAGATGGTGATAGAAGTAAATTGCATTTTCAACTTAATTATCTGAAAAATTTGCTTCCGTCAGTTGTAGTAAAGGGAATTAAAACTGCTGATCGAGTTGTTATCAGTAAAGAAGAAGATAAAATCACCAAGGCTGAAAAGTTCAAATTACTGGTTGAAGGCACGGGCTTTCGAGAGGTTATGGGAGTTGAAGGGGTTGATGGATGCAAAACTGTTAGTAATCATATTCATGAAGTTCGGGACACGCTGGGAATTGAAGCTGCCAGAGAGTGTATCGTTAAGGAGATAAAGTATGTAATGGTGGATACGCATGGGATGAATATAGACACGCGCCATATGATGCTTCTAGCAGATGTGATGACTGCCACTGGTCATATCCTCGGAATAAATAGATTTGGAATTTCAAAGATGGGCAAAAGTGTATTAATGCTTGCATCATTTGAGAGGACGGCAGATATTCTTTTCCAGGCATCTGTACGTGGAAGGGATGACTCGATTGGTGGAGTAAGTGAATCCATAATCATGGGTATACCAATTACAATAGGCACTGGAATGATCAAGGTCAAACAAAGGTTGGAGCTTCCGGATCTGCCTCATGGAGCCAGTCCTATTCTGTCTTGA 4179 0.3989 MNRGRTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDEDTRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEKLIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQESSVSSKFLDGWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDNHIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYGDDGMDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLSEFGVSREVEKGVLEVGFSADFVQSLQSFIKDNTKLTEETFTDDNSQILKKFGERISGITRAQLEVFLNICLSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRVKEIMNGNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLASVVITLDMERIQDAHLNIDANIVKESILQTKKAKLKPEHIKILDVKKLRVVPQDGDRSKLHFQLNYLKNLLPSVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGFREVMGVEGVDGCKTVSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIKVKQRLELPDLPHGASPILS* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0719 1392 Pfam RNA polymerase Rpb1, domain 3 525 703 IPR007066 GO:0003677|GO:0003899|GO:0006351
Pvu11g0719 1392 CDD RNAP_III_RPC1_N 33 891 IPR035697 -
Pvu11g0719 1392 Gene3D - 348 529 - -
Pvu11g0719 1392 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Pvu11g0719 1392 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1377 - -
Pvu11g0719 1392 Pfam RNA polymerase Rpb1, domain 5 841 1326 IPR007081 GO:0003677|GO:0003899|GO:0006351
Pvu11g0719 1392 Gene3D - 1327 1372 - -
Pvu11g0719 1392 Pfam RNA polymerase Rpb1, domain 4 730 834 IPR007083 GO:0003677|GO:0003899|GO:0006351
Pvu11g0719 1392 Gene3D RNA polymerase Rpb1, domain 3 530 702 IPR042102 -
Pvu11g0719 1392 SMART rpolaneu7 247 550 IPR006592 GO:0003677|GO:0003899|GO:0006351
Pvu11g0719 1392 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1378 IPR045867 GO:0003899|GO:0006351
Pvu11g0719 1392 CDD RNAP_III_Rpc1_C 1029 1372 IPR035698 -
Pvu11g0719 1392 Gene3D - 880 931 - -
Pvu11g0719 1392 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1378 - -
Pvu11g0719 1392 Gene3D RNA polymerase II, clamp domain 15 141 IPR044893 -
Pvu11g0719 1392 Gene3D - 703 820 IPR038120 -
Pvu11g0719 1392 Gene3D RNA polymerase ii 389 449 - -
Pvu11g0719 1392 Pfam RNA polymerase Rpb1, domain 2 356 522 IPR000722 GO:0003677|GO:0003899|GO:0006351
Pvu11g0719 1392 Gene3D - 821 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0719 Pvu-Chr11 6125823 6147990 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0719 K03018 - gmx:100811292 2515.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0719 11 6125823 6147990 Pvu11g0719 11 6125823 6147990 ECH