Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0708 ATGTTGGTGAGGCGTTTCTCAGGTAAATCGCCGTTGAATTGCGCTCTTTCCTCAACCGTAATCCGGCACTGTTTCTCAAGCTCCAATGAAAACGATGACGTGCGGAAAGTGTTCGGCATACTGAGCAGCACCTCCACGCCGGAGCAGCTGAAACAATCCCTCAAAGCAAGCGGTGTTTTCCTCTCCAATGAATTGATCGATCAAGTTCTCAAGAGGGTTCGCTTCAGCCACGGGAACCCCTCCCAAACCCTTGAGTTTTTCCGTTACACCGGAAGAAGGAAAGGGTTTTACCACACTGCGTTTTCCCTCGATACCATGCTCTACATTCTCGGTAGAAGCCGCATGTTTGGTCACGTTTGGGACCTCTTAATCGAATGCCGTCGAAAAGACCAAACGGCCATAACGGCTCGCACCGTTATGGTCGTGTTGGGCAGAGTTGCCAAAGTGTGTTCCGTTCGACAAACGGTGGACTCGTTTAGAAAGTTCAGGAAGCTGGTGGCTGAGTTTGATACTAATTGTTTCAATGCTCTGTTGAGAACGCTGTGTCAGGAGAAGAGCATGACGGATGCAAGAAACGTTTACCATAGTTTGAAGCATCGGTTTCGCCCAAATTTACAGACTTTTAACATTCTTCTTTCCGGGTGGAAGACCCCTGAGGATGCTGATGGGTTCTTTAAGGAGATGAAGGAAATGGGAGTGACACCTGATGTTGTTACATACAATAGTTTGGTGGATGTATACTGCAAGGGGAGGGAAATTGAGAAGGCTTATAAGGTGCTTGATGAAATGCGTGACCGGGATTTGTCGCCGGATGTGATCACGTATACATGTATCATTGGTGGATTGGGGTTGATTGGGCAGCCTGATAAAGCTAGAGGTGTTTTGAAGGAGATGAAGGAGTATGGGTGTTACCCTGATGCTGCAGCCTACAATGCTGCCATCAGGAATTTCTGCATTGCAAAGAGGCTTGGTGATGCTCATGGTTTGGTGAAGGAGATGGTGAGCATGGGTTTGTGTCCGAATGCAACTACTTACAATTTGTTCTTTCGGGTATTTTACTGGTCCAATGATTTGCATAGCTCTTGGATCATGTACAAGAGGATGATGGTTGAGGGGTGCCTTCCGAATACGCAGTCTTGTATGTTCTTGATAAGGTTGTTTAGGAAGCATGAGAAGGTGGAGATGGCGCTGCAGTTATGGGAGAACATGGTGGAAAAGGGTTTTGGGTCGTATACCTTGGTTTCTGACGTGCTGTTTGACTTGCTTTGTGATATGGGGAAGTTGGAAGAAGCAGAGAAGTGCTTCTTGGAGATGATCGAGAAGGGGCAGAAGCCGAGTAATGTGTCGTTTAGAAGAATTAAGGTTCTAATGGAACTAGCGAATAGACATGAGGCCCTTGAGAGCTTGACGCAGAAAATGTCCATATTTGGGCGACCACTCCAATTGCATCAAAGTTCAGTGAGCCAAACCGAGACACCGGATTCTCTCTTTACTAATAGTTAG 1503 0.4677 MLVRRFSGKSPLNCALSSTVIRHCFSSSNENDDVRKVFGILSSTSTPEQLKQSLKASGVFLSNELIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHTAFSLDTMLYILGRSRMFGHVWDLLIECRRKDQTAITARTVMVVLGRVAKVCSVRQTVDSFRKFRKLVAEFDTNCFNALLRTLCQEKSMTDARNVYHSLKHRFRPNLQTFNILLSGWKTPEDADGFFKEMKEMGVTPDVVTYNSLVDVYCKGREIEKAYKVLDEMRDRDLSPDVITYTCIIGGLGLIGQPDKARGVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAHGLVKEMVSMGLCPNATTYNLFFRVFYWSNDLHSSWIMYKRMMVEGCLPNTQSCMFLIRLFRKHEKVEMALQLWENMVEKGFGSYTLVSDVLFDLLCDMGKLEEAEKCFLEMIEKGQKPSNVSFRRIKVLMELANRHEALESLTQKMSIFGRPLQLHQSSVSQTETPDSLFTNS* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0708 500 Gene3D Tetratricopeptide repeat domain 356 492 IPR011990 GO:0005515
Pvu11g0708 500 Pfam Pentatricopeptide repeat domain 168 213 IPR002885 -
Pvu11g0708 500 PANTHER OS03G0208600 PROTEIN 23 484 - -
Pvu11g0708 500 Pfam PPR repeat 418 442 IPR002885 -
Pvu11g0708 500 Pfam PPR repeat 383 408 IPR002885 -
Pvu11g0708 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Pvu11g0708 500 Gene3D Tetratricopeptide repeat domain 32 216 IPR011990 GO:0005515
Pvu11g0708 500 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 23 484 - -
Pvu11g0708 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Pvu11g0708 500 TIGRFAM PPR: pentatricopeptide repeat domain 418 446 IPR002885 -
Pvu11g0708 500 TIGRFAM PPR: pentatricopeptide repeat domain 309 342 IPR002885 -
Pvu11g0708 500 TIGRFAM PPR: pentatricopeptide repeat domain 273 307 IPR002885 -
Pvu11g0708 500 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Pvu11g0708 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Pvu11g0708 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Pvu11g0708 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Pvu11g0708 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Pvu11g0708 500 Gene3D Tetratricopeptide repeat domain 217 355 IPR011990 GO:0005515
Pvu11g0708 500 Pfam PPR repeat family 305 350 IPR002885 -
Pvu11g0708 500 Pfam PPR repeat family 235 282 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0708 Pvu-Chr11 6008541 6011612 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0708 174 487 Miscellaneous Gene Families AT4G11690 27.052 4.18e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0708 - - vun:114183049 935.636