Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g0699 | ATGATCTGTGGGAGAGGCAAAGGGATTAATCCAAATCCATTGCTCCATTATGCTAACAATGGATACCAATTCCATACCCATAAACCTCGATCCCATGAAAGACCAACTCCAAAATTTCGCAGGCGCATTCCCTTCGTCACCGAAGTCAAAACAGTGGAAGACCCAGAAGAAGCCTTGTCTCTCTTTCACCGTTACAAGGAACAGGGTTTCCGCCATCATTACCCTTCCTATGCCGCATTGCTCTATAAACTAGCTCGTTCTAGAATGTTCGAAGCCGTCGAAACCATTCTCGCTCACATGAAAGACACCGATATGCAATGCAGAGAAAGCGTCTTCATTGCTCTCTTTCAATATTACGGTCCCCAAAAGGCCGTTGAACTCTTCAACAGAATGCCGCAGTTCAACTGTGTCCGCACGATACAGTCCCTCAACGCTCTTCTCAATGTTCTTGTAGACAATGATAGCTTCGATGAGGCTAATGATGTTTTTGGTCGATCCTATGAAATGGGTTTTCGTCCAAACACTGTCACTTACAATATAATGATCAAGGGGTGGCTGGGAAAGGGCGAGTGGGGGAAAGCATGTGAGGTGTTTGATGAAATGCTTCAGAAGAGAGTGGAACCTAGTGTAGTCACTTACAATAGTCTCATTGGGTTTTTGTGTAGGAAAGGTGATTTGGATAAAGCAATGGCCTTGCTTGAGGACATGGGTCAGAAAGGTAGACGCGCAAATGAAGTAACTTATGCTCTTTTGATGGAGGGTTTGTGTTCCGTGGAGAAGTATGATGAAGCTAAGAAGCTAATGTTTGATATGGCGTATCGTGGGTGTAAACCCCAGCCGGTGAATTTTGGTGTGCTGATGAATGATCTTGGGAAGAGAGGAAAGGTTGAAGAGATCAAGTCTTTGCTCCATGAGATGAAGAAAAGGCGGCTTAAGCCAGATGTTGTAACTTTCAACATATTGATAAATTATCTTTGCAAGGAAGGCAAGGCAGTGGAAGCTTACAAAGTTTTATTTGAGATGAAGATTGGGGGATGTGAGCCTAATGCAGCTACATACAGGATGGTGGTTGATGGTTTGTGCCGGATAGGGGATTTTGAGACAGGTCTGAGTGTTTTGAATGCAATGTTAACAAGTAGGCATTGGCCACGTTCTGAAACATTTAATTGTCTGGTTGTTGGCCTTTTGAAATCTGGGAATATTGATGGTGCATGCTTTGTGTTGGAAGAGATGGAGAAGAGAAAGGTAGAATTTGATTTGGGGAGCTGGGAAACCATAATAAAGTTTGCCTGCAGTGAGGATAAGGGTGTCAGTGAGCTTTTGACTGTACTTACATCTCCGTAA | 1344 | 0.4368 | MICGRGKGINPNPLLHYANNGYQFHTHKPRSHERPTPKFRRRIPFVTEVKTVEDPEEALSLFHRYKEQGFRHHYPSYAALLYKLARSRMFEAVETILAHMKDTDMQCRESVFIALFQYYGPQKAVELFNRMPQFNCVRTIQSLNALLNVLVDNDSFDEANDVFGRSYEMGFRPNTVTYNIMIKGWLGKGEWGKACEVFDEMLQKRVEPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGRRANEVTYALLMEGLCSVEKYDEAKKLMFDMAYRGCKPQPVNFGVLMNDLGKRGKVEEIKSLLHEMKKRRLKPDVVTFNILINYLCKEGKAVEAYKVLFEMKIGGCEPNAATYRMVVDGLCRIGDFETGLSVLNAMLTSRHWPRSETFNCLVVGLLKSGNIDGACFVLEEMEKRKVEFDLGSWETIIKFACSEDKGVSELLTVLTSP* | 448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0699 | 447 | Gene3D | Tetratricopeptide repeat domain | 51 | 121 | IPR011990 | GO:0005515 | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 139 | 173 | IPR002885 | - | |
| Pvu11g0699 | 447 | Pfam | Pentatricopeptide repeat domain | 232 | 293 | IPR002885 | - | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | IPR002885 | - | |
| Pvu11g0699 | 447 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 26 | 444 | - | - | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 174 | 208 | IPR002885 | - | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 209 | 243 | IPR002885 | - | |
| Pvu11g0699 | 447 | Pfam | PPR repeat | 387 | 415 | IPR002885 | - | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 244 | 278 | IPR002885 | - | |
| Pvu11g0699 | 447 | Gene3D | Tetratricopeptide repeat domain | 122 | 242 | IPR011990 | GO:0005515 | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 284 | 315 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 352 | 379 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 387 | 419 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 246 | 278 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 211 | 240 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 316 | 350 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 176 | 209 | IPR002885 | - | |
| Pvu11g0699 | 447 | TIGRFAM | PPR: pentatricopeptide repeat domain | 143 | 175 | IPR002885 | - | |
| Pvu11g0699 | 447 | Pfam | PPR repeat family | 173 | 217 | IPR002885 | - | |
| Pvu11g0699 | 447 | Pfam | PPR repeat family | 313 | 362 | IPR002885 | - | |
| Pvu11g0699 | 447 | PANTHER | OS05G0548600 PROTEIN | 26 | 444 | - | - | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 314 | 348 | IPR002885 | - | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 349 | 383 | IPR002885 | - | |
| Pvu11g0699 | 447 | SUPERFAMILY | TPR-like | 62 | 337 | IPR011990 | GO:0005515 | |
| Pvu11g0699 | 447 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | IPR002885 | - | |
| Pvu11g0699 | 447 | Gene3D | Tetratricopeptide repeat domain | 243 | 307 | IPR011990 | GO:0005515 | |
| Pvu11g0699 | 447 | Gene3D | Tetratricopeptide repeat domain | 379 | 445 | IPR011990 | GO:0005515 | |
| Pvu11g0699 | 447 | Gene3D | Tetratricopeptide repeat domain | 308 | 378 | IPR011990 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0699 | 143 | 433 | Glycosyltransferase | AT1G05670 | 27.986 | 2.05e-27 | 113 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g0699 | - | - | gmx:100776556 | 808.52 |