Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0645 ATGAATTTTTCAAGGATTGCGCGTTCTCTATCGCGCTCATCAAGAAATTTGTCACAAGGTAACGGGAGATTGGGAACCCTTGTAGGAATACCACGGACGAATGCGTGTTCTGATGGAGCGGAATCGGTATTAGGGTTTTTTAGAAGCTATGTTTCTTCTGCCAGAGCTTCCAGTTACCGAATCTTTTCCAATTTACCTGATTTTAAATCCGCTGCTGCAAACCCTAGGGTTCGCCGATTGTTTTCCAGTGAAGCCCCAAAGAAAAAGAACTATGAAAAGTTTTATCCCAAAGAAAAGAAGGAAACTCCGAAGGAAAATGACAAAAAATATGATTCTAAAGACAACTCCAATGCAAACACAGATGGTAATGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATATAATCACCCCATTATTGGTCTTGGGGCTATTTCTTACAACCTTTTCTAATAGTCCCCGTGAACAGCAGGAGATTAGCTTTCAGGAATTTAAAAATAAGCTTTTGGAACCGGGATTAGTAGACCATATTGTTGTCTCAAACAAATCGGTTGCCAAAGTATATTTAAGGAACTCTCCTCGCAACCAAACAGATAGTGAAGTAGTCCAAGGGACCCTGCCTGCAATAGAATATGGAGGTCAGTATAAATATTATTTTAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTACAGGAAGCGCAAGAAGCTCTTGGCATAGACTCTCATGATTTTGTGCCTGTAACATATTCTGCTGAGATGGTTTGGTACCAGGAACTCATGAAATTTGCTCCAACACTGTTATTGTTGGGATCTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGACTTGGTGTTAATGGAGGTGGTGGCGGTGGAGCTCGTGGAATATTCAACATAGGAAAAGCCCATGTTACAAAAGTAGACAAAAATACTAAAAATAAGATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACTTGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTAGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTCGGTCCTCCAGGTACAGGAAAAACACTTTTAGCAAAAGCAACTGCTGGGGAGTCTGGGGTGCCATTTCTTTCTATATCTGGTTCTGAATTCATGGAAATGTTTGTTGGTGTTGGACCGTCAAGGGTGAGAAATTTGTTTCTGGAAGCAAGGCAGTGTGCTCCTAGTATAATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGGCGTGGTGGTTTTTCTGGTTCAAATGATGAGCGTGAAAGTACATTGAATCAATTGTTGGTGGAGATGGATGGGTTTGGAACCACTTCTGGGGTTGTTGTTTTGGCAGGAACGAATAGGCCTGATATCTTAGATAAAGCACTTCTTAGGCCTGGACGATTTGACCGCCAAATAGCAATTGACAAACCTGACATTAAAGGCCGTGACCAGATATTTCAGATCTACTTGAAGAAGATCAAACTTGACCATGAACCTTCGTATTATTCTCAAAGGCTTGCAGCCCTTACTCCCGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCAGCTCTGATTGCTGCAAGATGTGAGGTGACACAAGTCACAATGGACCATTTTGAATCAGCCATCGATAGGATCATTGGTGGTTTGGAAAAGAAGAACAAGGTAATAAGCAAGGTGGAAAGGCATACTGTCGCTTACCACGAATCAGGCCATGCTGTTGCGGGTTGGTTTTTGGAACACGCTGAGCCCTTGTTAAAAGTAACTATCGTTCCACGTGGCTCAGCAGCTCTTGGATTTGCACAATATGTTCCGAGCGAAAACCTTCTCATGACAAAGGAGCAGCTTTTCGATATGACTTGCATGACACTTGGTGGTCGGGCTGCTGAGCAGGTTCTAATAGGGAGAATATCAACAGGAGCTCAGAATGACTTGGAAAAAGTAACGAAGATGACATATGCCCAAGTTGCAGTTTATGGTTTCAGCGAGAAAGTGGGTCTCCTTTCGTTCCCTTCAAGAGAGGACTCATTTGAGATGTCCAAACCATACAGCAGTAAAACTGCCGCACTCATCGACAGCGAAGTGCGTGATTGGGTGAACAAAGCATACGAACGAACTCTACATCTAATCGAGGAACACAAGGAACAAGTTGCCCAACTTGCCCAGTTATTGCTTGAAAAAGAAGTACTTCACCAGGAGGACTTGCGTGGAATTTTGGGTGAGCGACCATTCAAGGCTACTGAACCCACCAATTATGATAGATTTAAGGAAGGGTTTGAAGAAGAGGAGGAAAAGGTAGCAGAAAGTAGCATTGTAGATGTGCCTGAGGAAGGTGGCGGATCTTCTCCTTTAGAGCCCCAGGTTGTTCCCAGATAG 2430 0.4263 MNFSRIARSLSRSSRNLSQGNGRLGTLVGIPRTNACSDGAESVLGFFRSYVSSARASSYRIFSNLPDFKSAAANPRVRRLFSSEAPKKKNYEKFYPKEKKETPKENDKKYDSKDNSNANTDGNGNFQEAFMKQVQNIITPLLVLGLFLTTFSNSPREQQEISFQEFKNKLLEPGLVDHIVVSNKSVAKVYLRNSPRNQTDSEVVQGTLPAIEYGGQYKYYFNIGSVESFEEKLQEAQEALGIDSHDFVPVTYSAEMVWYQELMKFAPTLLLLGSLLYMGRRMQGGLGVNGGGGGGARGIFNIGKAHVTKVDKNTKNKIYFKDVAGCDEAKLEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSEFMEMFVGVGPSRVRNLFLEARQCAPSIIFIDEIDAIGRARGRGGFSGSNDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQIAIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARCEVTQVTMDHFESAIDRIIGGLEKKNKVISKVERHTVAYHESGHAVAGWFLEHAEPLLKVTIVPRGSAALGFAQYVPSENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPSREDSFEMSKPYSSKTAALIDSEVRDWVNKAYERTLHLIEEHKEQVAQLAQLLLEKEVLHQEDLRGILGERPFKATEPTNYDRFKEGFEEEEEKVAESSIVDVPEEGGGSSPLEPQVVPR* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0645 809 Pfam Peptidase family M41 574 754 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu11g0645 809 Gene3D Peptidase M41 577 775 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu11g0645 809 Gene3D - 492 576 - -
Pvu11g0645 809 SMART AAA_5 353 493 IPR003593 -
Pvu11g0645 809 Gene3D - 301 490 IPR027417 -
Pvu11g0645 809 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 258 757 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu11g0645 809 Pfam ATPase family associated with various cellular activities (AAA) 358 490 IPR003959 GO:0005524|GO:0016887
Pvu11g0645 809 CDD AAA 354 491 - -
Pvu11g0645 809 Gene3D - 145 257 - -
Pvu11g0645 809 MobiDBLite consensus disorder prediction 91 115 - -
Pvu11g0645 809 Pfam FtsH Extracellular 141 245 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Pvu11g0645 809 PANTHER ATP-DEPENDENT PROTEASE 29 808 - -
Pvu11g0645 809 SUPERFAMILY FtsH protease domain-like 574 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu11g0645 809 Coils Coil 721 748 - -
Pvu11g0645 809 ProSitePatterns AAA-protein family signature. 461 479 IPR003960 GO:0005524|GO:0016887
Pvu11g0645 809 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 783 IPR005936 GO:0004176|GO:0004222|GO:0016020
Pvu11g0645 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 564 IPR027417 -
Pvu11g0645 809 MobiDBLite consensus disorder prediction 784 809 - -
Pvu11g0645 809 MobiDBLite consensus disorder prediction 91 123 - -
Pvu11g0645 809 Pfam AAA+ lid domain 520 558 IPR041569 -
Pvu11g0645 809 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 29 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0645 Pvu-Chr11 5444477 5450504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0645 3 808 Miscellaneous Gene Families AT2G29080 74.723 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0645 K08956 - gmx:100806656 1308.51