Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0637 ATGCATGGTCTCCTCAGAAGCCCAACATTGCTCAGGATTACCACCACAAATGGCATCATCAACAGTCGTTTTTTTGGATCAGAACACCAAAGATTTGCTGAACTCATTGATGTATACGCTCGCGATCGAGCGTTGCACCTTGGCAAGAAGCTTCACGCGAGCTTAATCACCAAAGGTTTCTCTCGTTTCAACGTAATTGCTTCTAACCTCGTAGCCTTCTATGTGTCCTGTGGCCAACTCTCCCACGCGCGAAAACTGTTCGACAAAATTCCCACAACAAATGTTCGCCGCTGGATCGCCCTCATTGGCACGTGCGCTCGCTGCGGCTTCTGCAATCTCGCGCTCGCAGTGTTCGCTGAGATGCAAGCCGTTCAAGGGCTTACACCAAACTATGTATTCGTCATCCCCAGCGTTCTCAAAGCTTGCGGTCATGTTGGGGATCGAATCACGGGAGAGAAAATGCATGGCTTGATTTTGAAGTGTTCGTTCGAACTTGATTCTTTTGTGTCCAGTGCTTTGATCGTTATGTACTCAAAGTGTGCGAAAGTTGAGGACGCGCGCAAGGTGTTTGATGGGATGGTTGTGAAAGACACGGTGTCTCTAAATGCTGTTGTTACTGGGTATGTTCAACAGGGTGCTGCAAATGAGGCACTGAGTTTGGTGGAAAGTATGAAGTTGATGGGTTTGAAGTCAAATGTGGTGACTTGGAACTCTTTGATATCTGGGTTTTCACAGAAGGGTGACCAAGGAATGGTGTCTGAGATTTTTAGGTCGATGATTGCAGATGGGTTGGAGCCTGATGTGGTATCATGGACTTCTGTTATATCTGGTTTGGTGCAGAACTTTCGGAATAACGAGGCATTTGATGCGTTTAAGCAAATGTTGAGTCACGGGTTCTGCCCAACTTCAGCCACTATAAGCACCCTTTTGCCTGCTTGTGCTACTGCAGCAAGAGTTAAAATTGGGAGAGAGATTCATGGCTACGCTCTGGTAACTGGGGTGGAGGGAGATATATATGTAAGGAGTGCTCTTGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCAAAGAATTTGTTTAGTAGGATGGCTGAGAAGAACACCGTTACTTGGAACTCCATCATTTTTGGTTTTGCGAATCATGGGTATTGCAAGGAAGCCATTGAGCTCTTCAATCAGATGGAGAAGGAAGGGGTAGCCAAGTTGGGTCATTTAACTTTCACGGCAGCCCTCACTGCATGCAGTCATGTTGGAGACATTGAACTTGGACAGAGCCTGTTCAAGACTATGCATGAAAAACACGGTATTGAGCCACGGTTGGAGCATTATGCGTGCATGGTGGATCTTCTTGGTCGAGCAGGGAAACTCGATGAAGCTTATTGCATGATAAAGACAATGCCTATTGAACCTGATTTGTTTGTGTGGGGTGCATTACTAGCTGGATGTAGAAATCACGGGCATGTGGAGCTTGCGGAGGTGGCTGCTCTGCATTTGAAGGAATTAGAGCCCGAGAGTGCTGCAAACCGTCTTCTGTTGTCTAGCCTATATGCTGATGCAGGCAAATGGGGAAAGGCTGAGAAGATCAAGAAAAGGATGAAGAAGGGAAAACTCAGAAAACTTCAAGGTTTGAGTTGGATAAATAATTTATAA 1653 0.4598 MHGLLRSPTLLRITTTNGIINSRFFGSEHQRFAELIDVYARDRALHLGKKLHASLITKGFSRFNVIASNLVAFYVSCGQLSHARKLFDKIPTTNVRRWIALIGTCARCGFCNLALAVFAEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKMHGLILKCSFELDSFVSSALIVMYSKCAKVEDARKVFDGMVVKDTVSLNAVVTGYVQQGAANEALSLVESMKLMGLKSNVVTWNSLISGFSQKGDQGMVSEIFRSMIADGLEPDVVSWTSVISGLVQNFRNNEAFDAFKQMLSHGFCPTSATISTLLPACATAARVKIGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEAKNLFSRMAEKNTVTWNSIIFGFANHGYCKEAIELFNQMEKEGVAKLGHLTFTAALTACSHVGDIELGQSLFKTMHEKHGIEPRLEHYACMVDLLGRAGKLDEAYCMIKTMPIEPDLFVWGALLAGCRNHGHVELAEVAALHLKELEPESAANRLLLSSLYADAGKWGKAEKIKKRMKKGKLRKLQGLSWINNL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0637 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Pvu11g0637 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Pvu11g0637 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Pvu11g0637 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 400 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat 234 264 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat 444 467 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat 171 195 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat 199 229 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat 98 122 IPR002885 -
Pvu11g0637 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 196 244 - -
Pvu11g0637 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 548 - -
Pvu11g0637 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 194 - -
Pvu11g0637 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Pvu11g0637 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Pvu11g0637 550 PANTHER OS03G0271300 PROTEIN 26 194 - -
Pvu11g0637 550 PANTHER OS03G0271300 PROTEIN 244 548 - -
Pvu11g0637 550 PANTHER OS03G0271300 PROTEIN 196 244 - -
Pvu11g0637 550 Gene3D Tetratricopeptide repeat domain 327 400 IPR011990 GO:0005515
Pvu11g0637 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat family 367 415 IPR002885 -
Pvu11g0637 550 Pfam PPR repeat family 266 314 IPR002885 -
Pvu11g0637 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 367 IPR002885 -
Pvu11g0637 550 Gene3D Tetratricopeptide repeat domain 197 326 IPR011990 GO:0005515
Pvu11g0637 550 Gene3D Tetratricopeptide repeat domain 27 196 IPR011990 GO:0005515
Pvu11g0637 550 Gene3D Tetratricopeptide repeat domain 402 549 IPR011990 GO:0005515
Pvu11g0637 550 Pfam E motif 486 548 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0637 Pvu-Chr11 5369238 5371493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0637 78 547 Glycoside Hydrolase AT3G49170 33.333 5.87e-87 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0637 - - gmx:100790576 939.873