Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0627 ATGCGGCAATGGAAACAGCTGGGAGAGGTGTTGGTGGCGGCTTCTATCACCAACACGCTATCCCACTCTCACGCTGCAACGCTCAATCTCCCACGCGCCGTCGCTCTCGGACTCACCCAACCCCTTATTCTGAAAATCCTTTCAAACCAGTCGATTCACCCTTCGCAAAAGCTTCGTTTCTTCGAATGGTCTCGCTCCCACCACAACCCTTCCCCGGCCGCCTACTCCCTCGTCCTCCGCTCCCTCACCGGCGCCGGCTTCTTCTCCGATGTCCCTTCCCTCCTCCACTCCATGACGGAAGATGGCGTCGTTCTCGATCCCCACTCCCTCAACCTCCTACTCCACTCCTTCATTTTCTCCTCGAACTTCAATTTAGCTTTTCAATTACTAGATTACGTGCAGCACCTTCAGCTCGATGCCACCACAATCTACAACTCCCTCATCGCTGCTTTACTCACAAAAAACCAACTCTCTCTCGCGTTATCCATCTTCTTCAAGCTCCTCGACACGGTCGATTCGAAGTCCATCGCTTGCAACCAATTGTTGGTTGCTCTGAGAAAAGCAGATATGAGGGTGGAGTTTAAGCAAGTGTTTACAAAATTGAGGGAGAAGAAAGGGTTTTCGTTTGATACGTGGGGTTACAATGTGTGTATTCACGCGTTTGGTTGTTGGGGTGATTTGGCTTCTTGCTTCGCGCTTTTCAAGGAGATGAAAGACGATGGTAAGGGGTTGGTTTCCCCTGATTTGTGCACCTACAACAGTCTCATCACTGCGCTTTGCAGGCTTGGCAAGGTGGATGATGCGCTTGTTGTGTGGGAGGAGCTCAATGCCTCAGTTCACCAACCTGATCGCTTCACCTACACAAACCTAATTCATGCCTGTTGCGGAACTTTTAGGATGGGTGATGCTACAAGGGTTTTTAACCACATGCAGAGCCATGGGTTCCGTCCGGATACGCTTGTTTATAATTCTCTGCTGGATGGACATTTTAAGGCGACCAAGGTTGTTGAAGCCTGCCAGCTGTTTGAGAAAATGGTTCAAGAAGGGCTTTGTAAGGAGGGTCAACTGGAGGAGGCGCTGCAATTGGTGGAAGAAATGGAAAGTAGAGGTTTTACTGTTGACCTTGTCACCATAACATCGCTGCTGATTAGCATTCATAGGCACGGTCGCTGGGATTGGACGGACCGGCTTATGAAGTATATCAGGGAAGGTGATTTGGTAGTTTCCGTTCTAAAGTGGAAAGCTGGAATGGAAGCTTCTATGAAGAACCCTCCTGGCAAGAAAAAGGATTACTCACCTATGTTCCCTTCCAAAGGAGATTTTAGTGACATCGTGAGCTTCATGACCCGTGCCCAGGATACCACCAACATTAATGACGGCGAGGAAACTTCTTGCGATGGGATTGACGAGTGGTCATCATCGCCGCACATGGATAAATTGGCCAATCAAATGTGCTCCACTGGCTATTCTTCCCAGCTGTTTACTCCTTCTCGTGGTCAAAGAGTCCAAGAAAAAGGACCGGATTCTTTTGATGTTGATATGGTGAATACTTTCTTGTCTATATTTTTGGCCAAGGGAAAGTTGAGCTTGGCTTGCAAATTGTTTGAGATTTTCAGTGATGCAGGTGTGAGTCCTGTGAGTTATTCTTATAATTCTATCATGAGTTCCTTTGTCAAAAAGGGCTATTTCACTGAGGCTTGGGCTGTTCTGACTGAAATGGGAGAACAAATTTGTCCTGCTGATATAGCCACATACAATATGATAATTCAAGGTTTAGGAAAGATGGGACGAGCTGATCTAGCTAGTGCTGTTCTTGATACGCTACTGAAGCAGGGAGGTTATCTTGACATAGTTATGTATAACACTCTCATCAATGCTCTGGGAAAGGCAGGCCGAATCAAAGAGGTGAATAAGCTCTTTGAGCAAATGAGGAGTAGTGGGATAAATCCTGATGTTGTCACTTACAATACATTGATTGAAGTTCACAGTAAGGCTGGGTTATTGAAGGATGCTTATAAGTTCTTGAAAATGATGCTGGATGCTGGATGCACCCCTAACCATGTTACAGATACTACTTTAGATTATCTAGGGAGGGAAATTGATAAATTGAGATTCCAAAGGGCATCGATTTTGAGTGAAAAAGATGATCCTTCTTGA 2157 0.4631 MRQWKQLGEVLVAASITNTLSHSHAATLNLPRAVALGLTQPLILKILSNQSIHPSQKLRFFEWSRSHHNPSPAAYSLVLRSLTGAGFFSDVPSLLHSMTEDGVVLDPHSLNLLLHSFIFSSNFNLAFQLLDYVQHLQLDATTIYNSLIAALLTKNQLSLALSIFFKLLDTVDSKSIACNQLLVALRKADMRVEFKQVFTKLREKKGFSFDTWGYNVCIHAFGCWGDLASCFALFKEMKDDGKGLVSPDLCTYNSLITALCRLGKVDDALVVWEELNASVHQPDRFTYTNLIHACCGTFRMGDATRVFNHMQSHGFRPDTLVYNSLLDGHFKATKVVEACQLFEKMVQEGLCKEGQLEEALQLVEEMESRGFTVDLVTITSLLISIHRHGRWDWTDRLMKYIREGDLVVSVLKWKAGMEASMKNPPGKKKDYSPMFPSKGDFSDIVSFMTRAQDTTNINDGEETSCDGIDEWSSSPHMDKLANQMCSTGYSSQLFTPSRGQRVQEKGPDSFDVDMVNTFLSIFLAKGKLSLACKLFEIFSDAGVSPVSYSYNSIMSSFVKKGYFTEAWAVLTEMGEQICPADIATYNMIIQGLGKMGRADLASAVLDTLLKQGGYLDIVMYNTLINALGKAGRIKEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGLLKDAYKFLKMMLDAGCTPNHVTDTTLDYLGREIDKLRFQRASILSEKDDPS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0627 718 Gene3D Tetratricopeptide repeat domain 596 696 IPR011990 GO:0005515
Pvu11g0627 718 Gene3D Tetratricopeptide repeat domain 40 160 IPR011990 GO:0005515
Pvu11g0627 718 Gene3D Tetratricopeptide repeat domain 500 595 IPR011990 GO:0005515
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 650 IPR002885 -
Pvu11g0627 718 PANTHER DEFECTIVE KERNEL35 3 349 - -
Pvu11g0627 718 PANTHER DEFECTIVE KERNEL35 350 713 - -
Pvu11g0627 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 350 713 - -
Pvu11g0627 718 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 349 - -
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 651 685 IPR002885 -
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 321 350 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 285 319 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 214 241 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 349 374 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 618 652 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 548 581 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 584 616 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Pvu11g0627 718 TIGRFAM PPR: pentatricopeptide repeat domain 653 686 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat family 547 593 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat family 616 659 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat family 247 295 IPR002885 -
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat 349 371 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat 214 241 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat 143 167 IPR002885 -
Pvu11g0627 718 Gene3D Tetratricopeptide repeat domain 348 489 IPR011990 GO:0005515
Pvu11g0627 718 Gene3D Tetratricopeptide repeat domain 173 347 IPR011990 GO:0005515
Pvu11g0627 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Pvu11g0627 718 Pfam PPR repeat 314 346 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0627 58 693 Glycosyltransferase AT1G05670 23.137 3.31e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0627 - - gmx:100788992 1115.14