Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0625 ATGGCTGGTCGTTCCTTCTCAAAAGTTTGGAAAATCTGTGATTTTGGTTCTTTATTAGTGCCACACTTCACCAGAACCACCAAACTTATCAAACACGCTTCACCTCCATTGTCCTTCCTTCAATCTAATTCATTCAAAACGCCCTCGTTTTGGAGGCTATACCACGACGGAAGGCCCAGAGGCCCCCTTTGGAAGGGAAAGAAGCTCATTGGCAAAGAAGCGCTCTTTGTTGTATTGGGCTTGAAGAGGTTTAAGGATGACCAGGATAAGCTTCAAAAGTTCATCAAATCTCACGTTCTCAGACTCCTCAAGATGGACATGATCGCCGTTCTCACTGAACTTGAGCGTCAAGAACAAGTTTCTCTCGCTCTCATGATGTTTAAGGTTATGCAAAAGCAAGATTGGTACAAACCTGATACATACCTCTATAAGGACTTAATCATTGCATTGGCAAGGTCCAAAAAAATGGAAGAAGTATCGTACTTGTGGGAAAGCATGCGAAAGGAAAATCTGTTCCCTGATTCTCAGACTTTTACTGAAGTCATAAGGGGCTTCTTGAACTATGGATCTCCTGCGGATGCGATGGATGTATATGAGGACATGAAGAATTCTCCGGATCCACCTGACGAGTTGCCATTCAGAATTTTGTTGAAAGGACTCCTGCCACATCCTCTTTTGAGAAACAAAGTGAAACAAGATTTTGAGGAGATTTTTCCTGATTCAAGTATCTATGATCCGCCACAAGAGATATTTGGCGCCCGCTGA 765 0.4301 MAGRSFSKVWKICDFGSLLVPHFTRTTKLIKHASPPLSFLQSNSFKTPSFWRLYHDGRPRGPLWKGKKLIGKEALFVVLGLKRFKDDQDKLQKFIKSHVLRLLKMDMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDTYLYKDLIIALARSKKMEEVSYLWESMRKENLFPDSQTFTEVIRGFLNYGSPADAMDVYEDMKNSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEEIFPDSSIYDPPQEIFGAR* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0625 254 Gene3D Tetratricopeptide repeat domain 68 254 IPR011990 GO:0005515
Pvu11g0625 254 Pfam PPR repeat 143 170 IPR002885 -
Pvu11g0625 254 Pfam PPR repeat 177 203 IPR002885 -
Pvu11g0625 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Pvu11g0625 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Pvu11g0625 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 30 253 - -
Pvu11g0625 254 TIGRFAM PPR: pentatricopeptide repeat domain 177 203 IPR002885 -
Pvu11g0625 254 TIGRFAM PPR: pentatricopeptide repeat domain 143 174 IPR002885 -
Pvu11g0625 254 PANTHER PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC 30 253 IPR044795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0625 Pvu-Chr11 5281963 5284111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0625 116 221 Glycosyltransferase AT1G05670 29.245 2.65e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0625 - - gmx:100798492 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0625 11 5281963 5284111 Pvu11g0625 11 5281963 5284111 ECH