Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0613 ATGTTGAGGGTGGCCGTGCGATGGAATTGGAGGCCAACGGCTTCTCTGCCTCTAACTGCCTTCACATCCCAACATTTCCACACGCTGAACCCTAGGCCTCCATGTCGCACCGTCAGGCTTTTCTGCCGACCTTCTTCTTCCGCCGTTGCGCACACCTCGCTTCCTCTTTCCGCCGACTTGCACCGCTACCTCCGCTGCTCCTTGCCGCAGAATTCGCCGCTCCGAGTCGCGGTTCTCGTTAGCGGAGGTGTTGATAGCAGCGTCGCTCTGCGGCTGCTCCACGCCGCCGGCCATTCCTGCACCGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTTGAGAACTTTTGGTCTGAGTGCCCCTGGGAAGAGGATTTGAAGTATGCCAAAGCTGTCTGTGAACAGGTTGATGTACCGTTAGAAGTTGTTCACTTAACTGATGAATACTGGAACAATGTGGTTTCTTATCTCATTGAAGAGTATAGTAGTGGCCGAACTCCTAACCCCGATGTTCTTTGCAATACAAGGATAAAGTTTGGTGCATTCTTGGATGCTATTGGTGGCATGGGCTTTGACTATGTTGCCTCTGGGCATTATGCAAATGTTATCCACCCATGTGCTGATGGCATGAACGGGCCTTCTGTTCTTGAACTATCACAAGATATGGTAAAGGATCAAACATACTTCCTTTCACACCTCTCACAATCCCAGCTAAAGCAACTTCTTTTTCCACTTGGTTGTATTCCCAAGGATGAAGTTCGCAGGCTTGCAACAGAATTTGATTTACCAAATAAGGATAGAAAGGATTCCCAAGGAATATGCTTTTTGGGCAAGATAAGATTCAGTGAATTTGTTGCAAGACATATTGGAGAAAGAGAAGGCATCATACTGGAGGCCGAGACAGGGGATTTCCTTGGCAAACATCGAGGATTCTGGTTTTATACTATTGGTCAGCGTCAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTCTCAAGAAATTACTTTTCCTTTGACAAAAGGAGGCGTGTATTCCGTGTTGGCTCTTTTAAATGGCTTAGTGAGCTGCCTCCAGGCCAGACAAGTCAACTTCAATGCAAGGTGAGACATGGTCCTGGATTCTATGATTGTAGCTTACAAATGGAAGTGGAAGGAGATGGCCAAGGTCACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGTCTAGCAGCTGGGCAGTTTGCGGCCTTTTACGAGGGAAGAACATGCTTAGGTTCTGGTGTGATTTTGGAGTTCTGGGATGAGCAGAGTTTTCCAGTTTGTACAAAAGCTTTAGAAATTGCTAGAATGGAAGATAAATCAATACTTGGGAATCCAGTAAAAATAAAAGTTAAACCAGATAGCCCGCAAGAAGTATGTGATTCCGCAGAGTTAGCAAGTAAAGCATGA 1467 0.4622 MLRVAVRWNWRPTASLPLTAFTSQHFHTLNPRPPCRTVRLFCRPSSSAVAHTSLPLSADLHRYLRCSLPQNSPLRVAVLVSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEEDLKYAKAVCEQVDVPLEVVHLTDEYWNNVVSYLIEEYSSGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYANVIHPCADGMNGPSVLELSQDMVKDQTYFLSHLSQSQLKQLLFPLGCIPKDEVRRLATEFDLPNKDRKDSQGICFLGKIRFSEFVARHIGEREGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRVFRVGSFKWLSELPPGQTSQLQCKVRHGPGFYDCSLQMEVEGDGQGHSAVVRISEDDQGLAAGQFAAFYEGRTCLGSGVILEFWDEQSFPVCTKALEIARMEDKSILGNPVKIKVKPDSPQEVCDSAELASKA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0613 488 Gene3D HUPs 61 287 IPR014729 -
Pvu11g0613 488 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 74 436 IPR004506 GO:0008033|GO:0016740
Pvu11g0613 488 Pfam tRNA methyl transferase PRC-barrel domain 283 345 IPR046884 -
Pvu11g0613 488 PANTHER - 58 468 - -
Pvu11g0613 488 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 75 435 IPR004506 GO:0008033|GO:0016740
Pvu11g0613 488 Pfam tRNA methyl transferase HUP domain 75 278 - -
Pvu11g0613 488 CDD tRNA_Me_trans 75 435 IPR004506 GO:0008033|GO:0016740
Pvu11g0613 488 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 75 320 - -
Pvu11g0613 488 Pfam Aminomethyltransferase beta-barrel domain 355 435 IPR046885 -
Pvu11g0613 488 Gene3D - 288 347 IPR023382 GO:0016783
Pvu11g0613 488 Gene3D Translation factors 354 444 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0613 K21027 - gmx:100785275 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0613 11 5181542 5185383 Pvu11g0613 11 5181542 5185383 ECH