Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0561 ATGTCTCTGTTCCTTAAAGATCTGCCTTTGATGACCTTCCGCAGCAGACCATCTTTGGTGTTTCTATGCAGAGTTTCCCGCACAGTTCCATTGCCACTTTGCAGAACGAGAACAGTGTTTTCCGTTTCTGCCTCCACAACCCCTTCAACACAACCACTTCCTTCTGCTTCGGAAATACTCACTTCCAATGCTAAAGCACCTTTGGCCCTCGCTGAATCCCTTGAGTGGACCAAAAGGACTGCATTTTGTAGTGAATTGTCTTCAAATGATGTGGGAAAAAGGGTCCAGCTTTGTGGGTGGGTTGACCATCACAGGGTCCATGGTGGCCTCACATTTCTTAATCTCAGAGATCTCACTGGAATTGTTCAGGTTATAACCCTTCAAGATGAATTTCCAGATGCTCATTCCGCTATCAATGACCTGAGGCTTGAGTACGTGGTTGCCATTGACGGTGTTGTCAGGTCTAGGCCAAATGAATCAATCAACAAGAAGATGATAACAGGTTCCATCGAGGTTGCTGCAAGTAGCGTTCAAGTGCTAAATTCTGTAAATTTAAAGTTACCATTCTTGGTTACTACGGCAGATGATGCAAAAGACTCTCCTAAAGAAGAAATCCGTTTGAGGTACCGATGTCTTGACCTGAGGCGGCAACCAATGCAATTCAACATATTGCTGCGGTTTAAAGTGGTTCAACTCATTCAAAGATATTTAGAAGATGTTCATGGTTTTGTGGTGATTGAAACTCCAATACTGTCAAGATCCACTCCAGAAGGTGCCCGGGATTACTTAGTTCCATCAAGAATCCAGCCAGGAGCATTCTATGCCTTGCCACAAAGTTCTCAGCAATTTAAGCAAATGCTAATGGTAGCTGGTTTTGATAAATATTATCAGTTTGCAAGATGTTTTCGTGATGAAGATTTAAGAGCTGATAGACAACCTGAGTTCACACAACTAGATATGGAAATGGCCTTTACTCCTTTCGAGGATATGTTGGCGTTTAATGAAGAATTGATTAGAAAGGTTTTCTTTGAAATTAAAGGGGTTGAGTTACCAAATCCTTTTCCCAGGCTTACATATGCTGAAGCAATGAGTAGATATGGTTCAGACAGGCCAGATACCAGATTTGATCTTGAGTTAAAAGATGTATCTGACATTTTCTCAGGTTCTTCCTTCAAAGTTTTCTCTGATTCCTTAGAAAGTGGGGGAGTTATCAGAGTGTTATGCGTACCATCTGGTACAAAAAAATACTCAAATTCAGCTCTTAAGAAGGGTGATATTTACAATGAAGCACTCAAATCTGGTGCAAAGGGTTTACCCTTTCTTAAGGTCTTGGATGATGGGAACATGAAGGGAATTTCTGCTTTAGTATCAAGTATGGATCCTACAATTAGAGAGAATTTATTAAGGCGATGCTCTGCGGGACCAAGTGACCTCATTCTATTTGCAGTGGGTCATCATGCCTCTGTAAATAAAACTTTAGACTGTCTAAGAGTTTATGTAGCCCATGACCTAGGTTTGATTGACCATGGCAGGCATTCAATTTTGTGGATAACTGATTTTCCAATGTTTGAGTGGAACGATCCAGAGCAGAGGCTGGAGGCTGTTCACCATCCTTTCACTGCACCAAACCCTGAAGACATGAATGACCTTGCATCTGCTCGTGCTTTGGCTTATGACATGGTTTACAATGGGGTGGAGATTGGAGGGGGAAGTCTAAGAATTTTCAAACGTGGTATACAAGAAAAGGTTTTGGAGACTGTTGGCATCTCAAAGGAGCAGGCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCACTTGACATGGGGGCTCCACCACATGGAGGCATAGCCTATGGGTTGGACAGATTGATTATGCTGTTGGCGGGTGCTAATTCCATCAGAGATGTCATTGCTTTTCCAAAAACAACCACTGCACAGTGTGCCCTAACCAGATCACCTTCTGAGGTGGATCCTCAGCAGCTCAAAGATCTCTCAATTAAAACATAA 2004 0.4237 MSLFLKDLPLMTFRSRPSLVFLCRVSRTVPLPLCRTRTVFSVSASTTPSTQPLPSASEILTSNAKAPLALAESLEWTKRTAFCSELSSNDVGKRVQLCGWVDHHRVHGGLTFLNLRDLTGIVQVITLQDEFPDAHSAINDLRLEYVVAIDGVVRSRPNESINKKMITGSIEVAASSVQVLNSVNLKLPFLVTTADDAKDSPKEEIRLRYRCLDLRRQPMQFNILLRFKVVQLIQRYLEDVHGFVVIETPILSRSTPEGARDYLVPSRIQPGAFYALPQSSQQFKQMLMVAGFDKYYQFARCFRDEDLRADRQPEFTQLDMEMAFTPFEDMLAFNEELIRKVFFEIKGVELPNPFPRLTYAEAMSRYGSDRPDTRFDLELKDVSDIFSGSSFKVFSDSLESGGVIRVLCVPSGTKKYSNSALKKGDIYNEALKSGAKGLPFLKVLDDGNMKGISALVSSMDPTIRENLLRRCSAGPSDLILFAVGHHASVNKTLDCLRVYVAHDLGLIDHGRHSILWITDFPMFEWNDPEQRLEAVHHPFTAPNPEDMNDLASARALAYDMVYNGVEIGGGSLRIFKRGIQEKVLETVGISKEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLIMLLAGANSIRDVIAFPKTTTAQCALTRSPSEVDPQQLKDLSIKT* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0561 667 Gene3D Bira Bifunctional Protein; Domain 2 198 665 IPR045864 -
Pvu11g0561 667 SUPERFAMILY Nucleic acid-binding proteins 79 181 IPR012340 -
Pvu11g0561 667 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 58 666 IPR004524 GO:0005524|GO:0016874
Pvu11g0561 667 Pfam tRNA synthetases class II (D, K and N) 203 642 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu11g0561 667 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 58 666 - -
Pvu11g0561 667 SUPERFAMILY GAD domain-like 375 507 IPR004115 GO:0004812|GO:0005524|GO:0005737
Pvu11g0561 667 Pfam OB-fold nucleic acid binding domain 95 180 IPR004365 GO:0003676
Pvu11g0561 667 Gene3D - 358 507 IPR004115 GO:0004812|GO:0005524|GO:0005737
Pvu11g0561 667 PRINTS Aspartyl-tRNA synthetase signature 276 288 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu11g0561 667 PRINTS Aspartyl-tRNA synthetase signature 293 306 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu11g0561 667 PRINTS Aspartyl-tRNA synthetase signature 558 574 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu11g0561 667 PRINTS Aspartyl-tRNA synthetase signature 602 616 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Pvu11g0561 667 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 78 667 IPR004524 GO:0005524|GO:0016874
Pvu11g0561 667 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 228 639 IPR006195 -
Pvu11g0561 667 CDD AspRS_core 223 642 - -
Pvu11g0561 667 CDD EcAspRS_like_N 79 219 - -
Pvu11g0561 667 Gene3D - 71 183 IPR012340 -
Pvu11g0561 667 SUPERFAMILY Class II aaRS and biotin synthetases 203 641 IPR045864 -
Pvu11g0561 667 Pfam GAD domain 394 493 IPR029351 -
Pvu11g0561 667 TIGRFAM aspS_bact: aspartate--tRNA ligase 78 666 IPR004524 GO:0005524|GO:0016874
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0561 Pvu-Chr11 4648745 4655087 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0561 K01876 - gmx:100803308 1165.21