Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0552 ATGGCCTCCACCAATGCTCTTCCTCCCACCGGCACCGGCCTCGTCGTCAGCTTCGGCGAGATGCTCATCGACTTCGTCCCCACCGTCTCCGGCGTCTCCCTCGCCGAGGCCCCGGGTTTCCTCAAGGCTCCCGGCGGCGCCCCCGCCAACGTCGCCATCGCCGTCGCGAGACTCGGCGGCAAGGCGGCTTTCGTTGGCAAGCTCGGCGACGACGAGTTCGGCCACATGCTCGCCGCAATCCTCAAGGAGAACGACGTGAGATCCGACGGGATCAACTTCGACCAGGGCGCGCGCACTGCGCTCGCGTTCGTGACCCTACGCGCCGACGGAGAGCGTGAGTTCATGTTCTACAGAAACCCCAGCGCCGACATGCTCCTCACGCCCGAAGATCTCAATCTTGAACTCATCAGATCTGCAAAGGTATTTCATTATGGATCGATAAGTTTGATCGTGGAGCCATGCAGATCAGCACACCTGAAGGCAATGGAAGTTGCGAGGGAAGCAGGGTGTCTGCTTTCTTACGATCCAAACCTGCGGCTACCCTTGTGGCCATCACCTGAGGAAGCGCGTCAGCAAATACTCAGCATATGGGAGAAGGCTGATTTGATAAAGGTGAGTGATGTGGAACTGGAATTCCTAACCGGAAGTGACAAAATTGATGATGAATCTGCTCTCTCACTGTGGCACCCCAATTTGAAGTTGCTCCTTGTCACTCTTGGGGAACATGGTTCTAGGTACTACACCAAGAATTTCCATGGATCAGTGGACGCTTTTCATGTCAACACAGTTGATACAACTGGCGCAGGCGATTCCTTTGTTGGTGCTCTATTATGCAAGATTGTCGATGATCAATCCATACTTGAAGATGAAGCAAGGTTAAGGGAAGTACTCAAGTTTGCAAATGCGTGTGGGGCCATTACAACTACTAAAAAGGGAGCAATTCCCGCTCTTCCCACAGAGGCTGATGCCCTCAACCTGATCAAAGAGAAAAACGTAAAGGAGGATGTGCGTGAAGCCTTGAAAACCAGGTGTCTTATTCTGTGA 1044 0.5354 MASTNALPPTGTGLVVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAAILKENDVRSDGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLTPEDLNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAREAGCLLSYDPNLRLPLWPSPEEARQQILSIWEKADLIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGSRYYTKNFHGSVDAFHVNTVDTTGAGDSFVGALLCKIVDDQSILEDEARLREVLKFANACGAITTTKKGAIPALPTEADALNLIKEKNVKEDVREALKTRCLIL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0552 347 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Pvu11g0552 347 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016773
Pvu11g0552 347 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Pvu11g0552 347 PANTHER BNAA04G18320D PROTEIN 20 324 - -
Pvu11g0552 347 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Pvu11g0552 347 PANTHER HEXOKINASE FAMILY MEMBER 20 324 - -
Pvu11g0552 347 Gene3D - 13 338 IPR029056 -
Pvu11g0552 347 CDD bac_FRK 14 314 - -
Pvu11g0552 347 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Pvu11g0552 347 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Pvu11g0552 347 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0552 Pvu-Chr11 4564534 4568542 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0552 K00847 - gmx:100812560 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1580 5 38015411 38018680 Pvu11g0552 11 4564534 4568542 PCT