Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0524 ATGTCTCAGCAAAATGGGGTTCCTCCTCTAGTGACTGCACTAAAATCTTCAGCCCTAAAAAATGCTGCAAGTTTTCAGTTTCCCGGACACAACAGAGGGCATGCTGCACCTGCTTCCTTGAGTGAGGTCATTGGAAGAACAGCCTTTGCTCATGACTTGCCTATGCTTCCAGAGCTTGGCAATCTCTTTTGTTCTCATGGTCCCATATTAGAAGCACAGGTTGAAGCAGCCAAACTGTTTGGATCTTCACAGACATGGTTTCTTGTTGGAGGGACTACTTCTGGCATACATGCAGCAATAATGGCCACTTGTTCTCCAGGGGAGTTTCTCATTCTTCCCAGGAATTCTCATATATCAGCTATATCTGCATTGGTATTATCTGGTGCAGTGCCGAAGTACATCACTCCGAGCTCTGTCAATCATTGGCACATTGCTTCTGCAGTCACTCCAGCTCAGGTATTGAAAGCCATGGAGGAACTAGAAATGGAAGGGAAAAAAGCAGCAGCAGTGTTCATCACTTCACCTACTTATCATGGTATTTGCAGCAACTTGAGCAGGATTTCGGAGCTGTGTCATTCTCGAAAAATTCCTTTGATAGTTGATGAAGCTCATGGCGCACACTTTGGATTTCATTCCAAACTTCCCAAGTCAGCTCTCCAGCAAGGAGCTGACCTAGTTGTGCAGTCCACTCACAAGGTTTTATGCTCTCTTACTCAGTCATCTATGCTGCACATGTCAGGCAACATTGTAGATAAGGAAAGAGTTTGTAGATGTCTCCGAACTCTCCAAACCACAAGCCCTAGTTTTCTGCTTTTGGCATCCCTAGATGCTGCTAGAGCTCAACTCAGTGAGAACCTTGACATTGCATTTAACCAAGCAATTGCATTAGCCGATGAGGCAAAGTGTGAGCTAAAACAAATCCCTGGTATCTCACTACTTGAGAATACCAGCTTTCCAGCATCTCCTGCAGTTGATCCATTGCGTCTCACTGTAGGGTTTTGGAATCTTGGTTTATCAGGTTACGAAGCAGATGGAATCTTGTACAAGGATGATGAAGTGATTGGTGAACTTGTTGAGAGTACATGTATTACTTATGTACTTAATCTTGGGACTAGTAGGGAGCATGTTGAGAGGCTTTTGTTGGGGATAAAGCGTCTAGCTGAAACATATGGTTCCAATGAAGAAGCTGAGAAGAAAGTGGTGAATGTTGATGCAACCTTTGATGATATAAGCATGAGTTTGATCCCCAGAGATGCCTTTTTTGCAAGTAAAAGAAAAGTGGGAATAAGGGAGAGCATTGGGGAGGTTGCAGGGGAGCTTATATCTCCATACCCTCCAGGTATACCAGTATTGATCCCTGGTGAGGTTATAACTGAAAAAGTTGTTGATTATCTTCTTCATGTTAGGAGTAAAGGTGCTCAAATTAATGGAGCATCTGACTCCTCCCTTTCTTCAATATTGGTTTGTGGTAAATTATGA 1479 0.4341 MSQQNGVPPLVTALKSSALKNAASFQFPGHNRGHAAPASLSEVIGRTAFAHDLPMLPELGNLFCSHGPILEAQVEAAKLFGSSQTWFLVGGTTSGIHAAIMATCSPGEFLILPRNSHISAISALVLSGAVPKYITPSSVNHWHIASAVTPAQVLKAMEELEMEGKKAAAVFITSPTYHGICSNLSRISELCHSRKIPLIVDEAHGAHFGFHSKLPKSALQQGADLVVQSTHKVLCSLTQSSMLHMSGNIVDKERVCRCLRTLQTTSPSFLLLASLDAARAQLSENLDIAFNQAIALADEAKCELKQIPGISLLENTSFPASPAVDPLRLTVGFWNLGLSGYEADGILYKDDEVIGELVESTCITYVLNLGTSREHVERLLLGIKRLAETYGSNEEAEKKVVNVDATFDDISMSLIPRDAFFASKRKVGIRESIGEVAGELISPYPPGIPVLIPGEVITEKVVDYLLHVRSKGAQINGASDSSLSSILVCGKL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0524 492 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 425 475 IPR008286 GO:0003824
Pvu11g0524 492 Pfam Orn/Lys/Arg decarboxylase, major domain 8 306 IPR000310 GO:0003824
Pvu11g0524 492 PANTHER ARGININE DECARBOXYLASE 3 489 - -
Pvu11g0524 492 PANTHER ARGININE DECARBOXYLASE 3 489 - -
Pvu11g0524 492 SUPERFAMILY Ornithine decarboxylase C-terminal domain 352 490 IPR036633 GO:0003824
Pvu11g0524 492 CDD Orn_deC_like 9 306 IPR000310 GO:0003824
Pvu11g0524 492 Gene3D - 8 287 IPR015421 GO:0003824
Pvu11g0524 492 Gene3D - 393 485 - -
Pvu11g0524 492 SUPERFAMILY PLP-dependent transferases 8 391 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0524 Pvu-Chr11 4361255 4364322 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0524 - - gmx:100819143 747.658