Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0511 ATGACAAACGCACAGGGAGGCTCCTTGGTGGAGCCCAACACACACAACAACGCCTTACACAGACCCAAATTTGGAGCATTATTGCACTCCGAACCCAACTCGCCTTACCCCTCCAACAACGACGATGATAACTTCCAATACAACCGCCGCAGCAACGCCGCCCACTTAAACTACACAGACAGCAGCAACAATGTCTCTCCCTACGCCATGTCCCCGTGGAACTACCAACGCGATTCTTCATCTCCCCTCAAGAAGTCTCCGTGGTTATTACCCACCTCACCTGCGATAAACCTCTTCCACCACCAACAAGACGACTTTCCTGGAAACAGCCTCATCGGATCCCTCGTTCGCGAAGAGGGTCACATATATTCCTTGGCCGTTTTCGGGGACTTGTTATACACGGGCTCCGACAGCAAGAACATAAGAGTTTGGAAGCATCTCAAGGACTACACTGGCTTCAAATCAAGCAGTGGATTGGTAAAAACCATAATAATCTCCGGCGAAAAAATCTTCACGGGCCACCAAGACGGGAAGATCCGAGTGTGGAAGGTTTCGTCCAAGAATCCAAGCAAGCATAAACGCGTCGGGAGCTTGCCGACATTCAAAGACTACGTCAAGTGTTCCATGAACCCCAAGAATTACGTGGAGGTTCGGCGGCACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGTTTGAGCCTGGACAAGGAGGAAGGGTTGTTGTACTCCGGGTCGTGGGACAAGACGGTGAAGGTGTGGCGTGTGGCGGATTCCAAGTGCTTGGAGTCGATCAACGCGCACGACGATGCAGTGAACGCGGTGGTGGCGATGTCCGGAGGGTGGGTGTTGACGGGGTCCGCGGATGGGACGGTGAAGATGTGGAGGAGGGTGCGCGATGAGAAGGGGAAGAAGCCAAAGCATGTGTTGGACCGGATTTTGCTGGAGCAGGAGAACGCGGTTACAGCGCTGGCGGTGAACCCTACGGCCACGGTGCTTTATTGCGGTTCCTCTGATGGTATGGTGAACTTCTGGGAGAGTGACGAGAAGCGTGGGTTTATCCACGGCGGCGTTTTAAGAGGGCACAAGCTAGCCGTGCTCTGCCTGGCCGTGGCGGGGAACCTTCTCTTCAGTGGGTCTGCGGATAAGAACGTGTGTGTGTGGAAGCGCGACGAGAGTGGGTTCCACTCCTGCCATTCGGTTCTGACGGGTCACATGGGTCCTGTTAAATGTATCGCCGTGGAGGAGGACCAGGCGCAAGAGGAGAAGCCTCGCCAGAAAGGTGATCAGCGGTGGATTGTGTACACGGGGAGCTTGGACAAGTCGGTGAAGGTGTGGCGCGTGTCTGAACAGACGCCGGAGTTGAGCTGGACCACTCCGGGTCAATTTACCACATAG 1404 0.5499 MTNAQGGSLVEPNTHNNALHRPKFGALLHSEPNSPYPSNNDDDNFQYNRRSNAAHLNYTDSSNNVSPYAMSPWNYQRDSSSPLKKSPWLLPTSPAINLFHHQQDDFPGNSLIGSLVREEGHIYSLAVFGDLLYTGSDSKNIRVWKHLKDYTGFKSSSGLVKTIIISGEKIFTGHQDGKIRVWKVSSKNPSKHKRVGSLPTFKDYVKCSMNPKNYVEVRRHRNAVKVKHFDAVSSLSLDKEEGLLYSGSWDKTVKVWRVADSKCLESINAHDDAVNAVVAMSGGWVLTGSADGTVKMWRRVRDEKGKKPKHVLDRILLEQENAVTALAVNPTATVLYCGSSDGMVNFWESDEKRGFIHGGVLRGHKLAVLCLAVAGNLLFSGSADKNVCVWKRDESGFHSCHSVLTGHMGPVKCIAVEEDQAQEEKPRQKGDQRWIVYTGSLDKSVKVWRVSEQTPELSWTTPGQFTT* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0511 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Pvu11g0511 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 297 IPR001680 GO:0005515
Pvu11g0511 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 258 - -
Pvu11g0511 467 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 458 IPR045182 -
Pvu11g0511 467 Gene3D - 355 467 IPR015943 GO:0005515
Pvu11g0511 467 Gene3D - 96 219 IPR015943 GO:0005515
Pvu11g0511 467 Pfam WD domain, G-beta repeat 319 347 IPR001680 GO:0005515
Pvu11g0511 467 Pfam WD domain, G-beta repeat 262 297 IPR001680 GO:0005515
Pvu11g0511 467 Pfam WD domain, G-beta repeat 119 145 IPR001680 GO:0005515
Pvu11g0511 467 Pfam WD domain, G-beta repeat 359 391 IPR001680 GO:0005515
Pvu11g0511 467 Pfam WD domain, G-beta repeat 228 256 IPR001680 GO:0005515
Pvu11g0511 467 Pfam WD domain, G-beta repeat 400 448 IPR001680 GO:0005515
Pvu11g0511 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 391 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 397 449 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 260 298 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 146 183 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 354 391 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 222 257 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 108 145 IPR001680 GO:0005515
Pvu11g0511 467 SMART WD40_4 309 348 IPR001680 GO:0005515
Pvu11g0511 467 MobiDBLite consensus disorder prediction 32 47 - -
Pvu11g0511 467 Gene3D - 220 353 IPR015943 GO:0005515
Pvu11g0511 467 PRINTS G protein beta WD-40 repeat signature 170 184 IPR020472 -
Pvu11g0511 467 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Pvu11g0511 467 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Pvu11g0511 467 MobiDBLite consensus disorder prediction 26 47 - -
Pvu11g0511 467 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 13 458 - -
Pvu11g0511 467 SUPERFAMILY WD40 repeat-like 109 460 IPR036322 GO:0005515
Pvu11g0511 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Pvu11g0511 467 CDD WD40 119 449 - -
Pvu11g0511 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 348 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0511 Pvu-Chr11 4271059 4273734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0511 132 391 Acyl Lipid Metabolism Gene Families AT3G18860 27.820 6.15e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0511 - - gmx:100790597 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0511 11 4271059 4273734 Pvu11g0511 11 4271059 4273734 ECH