Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0510 ATGACAAATGCACATGGTGGCTCCACATTAGTGGAGCTAAATACACATAACACCTTACACAAACCCAAATTCGAAACATTATCACATCCTGAACCTATTTCGTTTAGCAATTTTAATAATGAGGACGATGACTTCAACTTTAACCACAATAGCAGCACCACAAGTAGTAATAATGCCTCTCCCTATTCTATGTCCCCATGGAACTTCCAACCCAATACTTATTCTCCTCTCAACAAGTCCCCATGGTTATTATTACCTAACTCACCCGAAAGTGTCTTCAACCACCACAACGAAGATAATCACCCTGAAACTGAGCTTATCGGATCGCTTGTCCGCGAAACAGGTCACATATATTCCCTGGCCGTTTCAGGGGAATTGTTATACACAGGCTCGCACAGTAAGAACATAAGAGTTTGGAAACAACTCAAAGACTTCACTGGTTTCAAATCAAGCAGTGGATTGGTCAAAACCATAGTAATATTCGGTGGCAAAATTTTCACTGGCCACCAAGATGGGAAAATCAGAGTGTGGAAAGTTTCTTCCAAGAATCCAAATAACCACAAACGCATAGGGAGCTTGCCCACGTTTAAAGAATACGTGAAAAGTTCCATGAACCCAAAGAACTACGTGGAGGTTCGGAGAAACAAGAATGCAGTGAAGGTGAAACACTTCGATGCCATTTCGAGTTTAAGCCTAGACAAGGAAGAAGGGTTATTGTACTCTGGTTCGTGGGACAGAACATTCAAGGTGTGGCGCGTGGCAGATTCAAAATGCTTAGATTCTATTAGTGCACACGATGATGCAGTGAACGCGGTGGTCACATTGTTTAACGGACGTGTGTTGACCGGATCTGCTGATGGGACTGTGAAGTTATGGAAGAGGGTGAATGGTCAAAAAGGGGAGAAAGGGGAGAAGGGAAAAAAGTCAAAGCATGTCTTGGATCGAATTTTGCTAAAGCAAGAGAATGCTATTACATCGTTAGCTGTGAATTGTATGGCCACAGTGGTTTATAGCGGTTCTTCTGATGGTTTAGTGAACTTTTGGGAACGTGACCAAAAGGGTGAATACTTGCAAGGTGATGTTTTAAAGGGACATAAACTCGCTGTGCTTTGCCTTGCTGTGGCTGGAAACCTCATTTTTAGTGGCTCAGCAGATAAGAATGTGTGTGTGTGGAGGCACAATAAGAATGGTTTCCACACATGTCATTCAGTTTTGGTAGGTCACACAGGCCCTGTTAAGTGTATTGCCGTGGAGGAAGAATACTTGCAATCAAAGAAGTGTCATGAACAAGAACAAGGGTGGATAGTGTACACTGGGAGCTTGGACAAGTCAGTGAAGGTGTGGCGTGTGTTTGAACAAGTGTCAGAGGTAGGCACATTCCAAAGCAAGACCCCTTTGAATCATGTTGCTCACCAAGAACAATGA 1425 0.4316 MTNAHGGSTLVELNTHNTLHKPKFETLSHPEPISFSNFNNEDDDFNFNHNSSTTSSNNASPYSMSPWNFQPNTYSPLNKSPWLLLPNSPESVFNHHNEDNHPETELIGSLVRETGHIYSLAVSGELLYTGSHSKNIRVWKQLKDFTGFKSSSGLVKTIVIFGGKIFTGHQDGKIRVWKVSSKNPNNHKRIGSLPTFKEYVKSSMNPKNYVEVRRNKNAVKVKHFDAISSLSLDKEEGLLYSGSWDRTFKVWRVADSKCLDSISAHDDAVNAVVTLFNGRVLTGSADGTVKLWKRVNGQKGEKGEKGKKSKHVLDRILLKQENAITSLAVNCMATVVYSGSSDGLVNFWERDQKGEYLQGDVLKGHKLAVLCLAVAGNLIFSGSADKNVCVWRHNKNGFHTCHSVLVGHTGPVKCIAVEEEYLQSKKCHEQEQGWIVYTGSLDKSVKVWRVFEQVSEVGTFQSKTPLNHVAHQEQ* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0510 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515
Pvu11g0510 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 293 IPR001680 GO:0005515
Pvu11g0510 474 Gene3D - 91 215 IPR015943 GO:0005515
Pvu11g0510 474 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 463 IPR045182 -
Pvu11g0510 474 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Pvu11g0510 474 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Pvu11g0510 474 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Pvu11g0510 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 349 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 310 349 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 141 178 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 255 293 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 355 392 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 103 140 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 214 252 IPR001680 GO:0005515
Pvu11g0510 474 SMART WD40_4 398 449 IPR001680 GO:0005515
Pvu11g0510 474 CDD WD40 114 449 - -
Pvu11g0510 474 Gene3D - 216 303 IPR015943 GO:0005515
Pvu11g0510 474 SUPERFAMILY WD40 repeat-like 102 452 IPR036322 GO:0005515
Pvu11g0510 474 Pfam WD domain, G-beta repeat 401 448 IPR001680 GO:0005515
Pvu11g0510 474 Pfam WD domain, G-beta repeat 361 391 IPR001680 GO:0005515
Pvu11g0510 474 Pfam WD domain, G-beta repeat 223 251 IPR001680 GO:0005515
Pvu11g0510 474 Pfam WD domain, G-beta repeat 257 293 IPR001680 GO:0005515
Pvu11g0510 474 Pfam WD domain, G-beta repeat 112 140 IPR001680 GO:0005515
Pvu11g0510 474 Gene3D - 304 472 IPR015943 GO:0005515
Pvu11g0510 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 391 IPR001680 GO:0005515
Pvu11g0510 474 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0510 Pvu-Chr11 4259652 4261116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0510 165 392 Acyl Lipid Metabolism Gene Families AT3G18860 27.344 2.11e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0510 - - vun:114170412 738.413