Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0503 ATGGCGATTCAAGTCCTTAAACAGTTTTGCAAAACACCGAGACCCAAAGCATGGGCTCTGTTATTTTCTTCTTCTTGTTCAAATCATGATTCCCAGAGTTTTGTAACAAATGTGGTTACAATCCTTATCAATCACCGTTCCAAGTCACGTTGGAGCAATCTCCGTTCGGCGTGCCCCAACGGCATAGACCCCCTTGAGTTTTCCCAAATCACCCTCCACCTCAAGAACAAACCCCAACTCGCCCTTCGCTTCTTCCTATGGACCAAATCCAAATCCCTCTGCCACCACAACCTCGCCTCTTACTCCGCCATCATCCACCTCCTCGCGCGTGGGCGCCTCTCCTCAGACGCTTCCCACGTCATCCGAACGGCAATTCGCGATTCCGACCAAACCGACGACCAAAATTGTCGTTTTGCCTCGCCGCCTCTGAACCTTTTCGAAACCCTAGTCAAGACCTACCGAGATTTTGGCTCCGCTCCATTCGTGTTCGATTTGTTGATCAAGGCGTGTTTGGATTCCAGAAAGGTTGACCCTTCTGTTGAGATCGTTAGAATGCTGCTCTCTCGCGGGATTAGCCCTAAAGTTAGCACCTTGAATTCTTTGATTACTGGGGTTTGTAGAAGTCGAGGGGTGGATGAAGGGATGGAGGAACTTTGGCATGAAATGAGGAGTAACTGTAAACCCAATGCTTATAGCTACAGTGTGTTGATGACTGCTTTTTGTGATGAAGGGAGGATGGGGTATGCAGAAAAGTTGTGGGAAGAAATGAGAAATGAGAAAATAGAGCCTGATGTTGTTAGTTATAATACTATTATTGGTGGGTTTTGCAAGATTGGAGATGTTGCTAGGGCTGAAGAGTTTTTCAGGGAAATGGCGTTGGCGAGTGTTGAGACCACTGCTTCAACTTATGAACATCTTGTGAAGGGATATTTCAGTGTTGGGGATGTTGATTCGGCTGTTCTGGTTTATGAGGATATGTCTAGGAGAGATTTAAGGCCTGATGCTTCAACCCTTGACATGATGGTTAGGTTGCTTTGTGATAAGGGTAGGGTTCAGGAAGCTCTGGAGTTTTTGAGGTGCGCAGTTAGTAAATATGACTTGATTCCAAGGGAAAAGAGTTATGAGGTCTTGATGAAGGGGTTGTGTTTTGAGGGAAGAATGGAAGAAGCGTTGAAGCTTCAGGCAGAGATGGTAGGAAAAGGTTTCCAACCGAAAGCTGAAATATATGGTGCTTTTGTTGATGGATACATTCGACAGGGGAACGAGGAAATGGCAAGAGCTTTGAGGAAAGAAATGCTCCAAAATGAGATGCAGAGCTAA 1320 0.4591 MAIQVLKQFCKTPRPKAWALLFSSSCSNHDSQSFVTNVVTILINHRSKSRWSNLRSACPNGIDPLEFSQITLHLKNKPQLALRFFLWTKSKSLCHHNLASYSAIIHLLARGRLSSDASHVIRTAIRDSDQTDDQNCRFASPPLNLFETLVKTYRDFGSAPFVFDLLIKACLDSRKVDPSVEIVRMLLSRGISPKVSTLNSLITGVCRSRGVDEGMEELWHEMRSNCKPNAYSYSVLMTAFCDEGRMGYAEKLWEEMRNEKIEPDVVSYNTIIGGFCKIGDVARAEEFFREMALASVETTASTYEHLVKGYFSVGDVDSAVLVYEDMSRRDLRPDASTLDMMVRLLCDKGRVQEALEFLRCAVSKYDLIPREKSYEVLMKGLCFEGRMEEALKLQAEMVGKGFQPKAEIYGAFVDGYIRQGNEEMARALRKEMLQNEMQS* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0503 439 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 211 436 - -
Pvu11g0503 439 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 6 216 - -
Pvu11g0503 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Pvu11g0503 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Pvu11g0503 439 Pfam PPR repeat 261 291 IPR002885 -
Pvu11g0503 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Pvu11g0503 439 Gene3D Tetratricopeptide repeat domain 71 214 IPR011990 GO:0005515
Pvu11g0503 439 Gene3D Tetratricopeptide repeat domain 215 312 IPR011990 GO:0005515
Pvu11g0503 439 Pfam PPR repeat family 193 242 IPR002885 -
Pvu11g0503 439 Pfam PPR repeat family 301 346 IPR002885 -
Pvu11g0503 439 Pfam PPR repeat 373 402 IPR002885 -
Pvu11g0503 439 Pfam PPR repeat 408 435 IPR002885 -
Pvu11g0503 439 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 211 436 - -
Pvu11g0503 439 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 6 216 - -
Pvu11g0503 439 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Pvu11g0503 439 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Pvu11g0503 439 TIGRFAM PPR: pentatricopeptide repeat domain 373 404 IPR002885 -
Pvu11g0503 439 TIGRFAM PPR: pentatricopeptide repeat domain 266 291 IPR002885 -
Pvu11g0503 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Pvu11g0503 439 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Pvu11g0503 439 Gene3D Tetratricopeptide repeat domain 314 439 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0503 97 438 Glycosyltransferase AT1G05670 27.697 1.02e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0503 - - pvu:PHAVU_011G049000g 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0503 11 4214039 4215502 Pvu11g0503 11 4214039 4215502 ECH