Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0496 ATGGCAATTAGGTCCCTGAGAGTGAGAGATGCTCTGGTATTCTGTGACCATGTCCAGGCAATAAAATCTGGTTTGGTATCAAGCATTTTCACTTGTAATCAACTCATTCACCTCTATTCCAACCATGGCCTTTTGCAAGAGGCCCACAAACTGTTCGATGAAATTCCCCACCCGAATGTATTCTCTTGGAATGTCATAATCATGGCTTACATAAAAGCACACAACTTGACACACGCACAAGCCCTTTTTGACTCGGCCTCTCATAGAGATTTGGTTTCTTATAATTCCATGTTGTCGGCTTATGTTGGTTTGGAGGGCTACGAGACTGAGGCACTTGATTTCTTTACTAGAATGCAATCTGCACGTGACACAATTGGGATTGATGAGTTCACTCTCACGACCATGCTTAACCTTGCTGCCAAACTACGTGTGCTGCGTTACGGGAAGCAGATGCATTCATATATGGTGAAAACTGCAAATGATTTAAGTAAGTTTGCTTTGAGTTCTCTCATAGACATGTACTCTAAATGCGGTTCCTTTCAAGAAGCATGTACTGCATTTGGCGGTTGTGAGGGGATGGTGGACCTGATTTCAAAGAATGCAATGATTGCAGCTTGTTGTAGGGAAAAAAGGATGGACATGGCCTTAGATATATTTTGGAAAAATCCTGAATTAAATGATACTGTGTCTTGGAACACATTAATTGCAGGGTACGCCCAGAATGGCTATGTGGAGAAATCACTTACCTCGTTTATTGTGATGACTGAAAATGGTATTGGTTTCAACGAACACACTTTAGCAAGTGTTTTGAGTGCTTGCACAGGTCTAAAATGTTTAAAACTTGGCAAGTCTGTTCATGCTTGGGTTTTGAAAAAGGGTTACAGTTCAAATCAATTTATTAGCAGTGGCGTTATCGACTTCTACTCTAAGTGTGGGAATATCAGATATGCCGAGTTAGTCAATGCAGAAATTGAGATTAAAAGTCCATTTGCAGTTGCTTCATTGATTGCAGGCTACTCATCTCAAGGTAACATGACGGAAGCCCAAAGGCTTTTTGATTCACTTTTGGAAAGAAACTCTGTTGTATGGACAGCTCTATGTTCTGGGTATGTTAAATCACAACAATGTGAGGAAGTATTCAAACTTTTCAGAGAGTTTAAAACTAAAGAAGCAGTAGTTCCTGATACAATGATCATTATCAGTGTGCTTGGTGCCTGTGCCATACAAGCTGCCCTTAGTTTGGGAAAGGAAATTCATGCTTACATCTTGAGAATGAGATTTCATGTGGATAAGAAATTACTGAGTGCTTTGATTGATATGTACTCAAAATGTGGAAATGTTACTTATGCGGAGAAAATCTTCCAACCGGTTACTGATAGTGATAGAGATGCAATCTTATACAATATCATGATTGCTGGTTATGCTCATCATGGTTATGAAAATAAAGCAATTTATCTTTTTCAGGAAATGTTGAATAAAAGTGTCAAGCCAGATGCAGTCACTTTTATTGCACTTCTATCAGCTTGTCGGCACAGTGGATTAGTTGAACTAGGAGAGAAATTTTTTATTTCCATGGAACAAGATTACAATGTATTGCCGGAGATTTACCACTATGCGTGTATGGTTGATATGTATGGAAGGTCTGATAAACTAGAAAAGGCAGTAGAATTCATGAGGAAGATTCCCGTACCAATAGATGCTACAATCTGGGGGGCATTTCTTAATGCTTGTCAGATGAGCAGCGATGCAGCACTTGTCAAACGGGCAGAAGAGGAGCTATTAAAAGTTGATCCAGATAACGGGTCTAGATATGTGCAGTTGGCCAATGCATATGCTGCCACAGGGAAGTGGGATGAGATGGGAAGAATAAGAAAGAAAATGAGAGGATACGAGGCCAAGAAGCTTGCTGGTTGCAGTTGGATATTTGTGGAAAATGGTATTCATGTATTTACTTCTGGTGATACATCTCATTCAAAAGCAGATGCAATATATTCAACTTTGATATGCTTGACTGGGAAACTGTATTTATCTTTCATAGAACTGAAGCAACTTAATGAAATTCAGACTGGTATTTAG 2076 0.394 MAIRSLRVRDALVFCDHVQAIKSGLVSSIFTCNQLIHLYSNHGLLQEAHKLFDEIPHPNVFSWNVIIMAYIKAHNLTHAQALFDSASHRDLVSYNSMLSAYVGLEGYETEALDFFTRMQSARDTIGIDEFTLTTMLNLAAKLRVLRYGKQMHSYMVKTANDLSKFALSSLIDMYSKCGSFQEACTAFGGCEGMVDLISKNAMIAACCREKRMDMALDIFWKNPELNDTVSWNTLIAGYAQNGYVEKSLTSFIVMTENGIGFNEHTLASVLSACTGLKCLKLGKSVHAWVLKKGYSSNQFISSGVIDFYSKCGNIRYAELVNAEIEIKSPFAVASLIAGYSSQGNMTEAQRLFDSLLERNSVVWTALCSGYVKSQQCEEVFKLFREFKTKEAVVPDTMIIISVLGACAIQAALSLGKEIHAYILRMRFHVDKKLLSALIDMYSKCGNVTYAEKIFQPVTDSDRDAILYNIMIAGYAHHGYENKAIYLFQEMLNKSVKPDAVTFIALLSACRHSGLVELGEKFFISMEQDYNVLPEIYHYACMVDMYGRSDKLEKAVEFMRKIPVPIDATIWGAFLNACQMSSDAALVKRAEEELLKVDPDNGSRYVQLANAYAATGKWDEMGRIRKKMRGYEAKKLAGCSWIFVENGIHVFTSGDTSHSKADAIYSTLICLTGKLYLSFIELKQLNEIQTGI* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0496 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 28 62 IPR002885 -
Pvu11g0496 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 121 IPR002885 -
Pvu11g0496 691 Gene3D Tetratricopeptide repeat domain 481 653 IPR011990 GO:0005515
Pvu11g0496 691 Gene3D Tetratricopeptide repeat domain 145 280 IPR011990 GO:0005515
Pvu11g0496 691 Gene3D Tetratricopeptide repeat domain 4 144 IPR011990 GO:0005515
Pvu11g0496 691 Pfam PPR repeat 334 359 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 229 259 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 537 560 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 361 388 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 200 219 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 61 84 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 435 455 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 92 120 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 30 55 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat 168 187 IPR002885 -
Pvu11g0496 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Pvu11g0496 691 Pfam E motif 582 641 IPR046848 -
Pvu11g0496 691 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 76 354 - -
Pvu11g0496 691 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 330 654 - -
Pvu11g0496 691 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 221 - -
Pvu11g0496 691 TIGRFAM PPR: pentatricopeptide repeat domain 200 219 IPR002885 -
Pvu11g0496 691 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Pvu11g0496 691 TIGRFAM PPR: pentatricopeptide repeat domain 30 55 IPR002885 -
Pvu11g0496 691 Pfam PPR repeat family 463 509 IPR002885 -
Pvu11g0496 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Pvu11g0496 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Pvu11g0496 691 Gene3D Tetratricopeptide repeat domain 339 462 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0496 Pvu-Chr11 4188645 4191830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0496 66 667 Glycoside Hydrolase AT3G49170 30.909 5.13e-93 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0496 - - vra:106778390 1267.68