Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0474 ATGGAGGAGAAACGCCGCGACGCTGCTCCCTCCGCCGCAGATTCCCCGGCATCGGAGCCCGCATCGTCTCGCCGCCGCGCCGGAGGTAACAAGCGCAAGTCCGCCGCTCTCAACGCCTCCGGTTCATCCTCCGCCCCCTCCAAACGCGCCGCTCGGGACAAGGCCTCGCCGCTCCATCCTCCTCCCCTCCACAATGGCCCCCTCACCCGGGCCCGCCAAACCCCCAACTCCGTCGCCGCCTCCTCTTCCGCTGGCGCTTCCACTCCCGCCGCCGTCAAACACTCCGAACGTACACACCTCTCCGCCGCCGACTCCGCCGCGCTCGCCGAGCAGCTCAGGAAGGAGAGCGAGTGGGAGACTCTGGAGGCCGCGATTGAAGCGGAATTCGAAGCCATCAGATCTCGCGGTGCCAATGCGCATGTGGTTCCCACTCATTGCGGTTGGTTTTCATGGTTGTATATTCATGAAATTGAGAAGCAAATGTTGCCTTCTTTCTTTAATGGCAAAATTGAAAATCGGACGCCTGATGTATACATGGAGATACGAAATTGGATAATGAAGAAGTTTCATTCAAATCCCAATGTGCAAATTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGACATGGAAGCTAGGCAAGAAGTAATGGAGTTTTTGGACTACTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTGCTGTGGTAACTGCCATGGAGGATGACGGAGATGCAGAAAAGAGTTCTTTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAATTATGTCGACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACAGCCTCTGGCTTGTTTCCAGAGTCTACTATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCTGTTGAGATGCTTGAGTACCATTGCAACTCATGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAAGAGACCCTTCTGCTCCTTGAAGCCTTAGAACTTTATAAAGAAAATTGGAATGAAATTGCAGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATCGTACTTTGTTCAAATGCCAATTGAGGATACCTTTGCTGAATTTGAGGATAATGTTGATGCTGGTTGCAAAGAACCAACAGATCCAGTTGCAACAAACAATGACTCATCTGTGGGCAAGGATGCTTCAGAGTGTATTGAGAATGATACTAGCGATCAGGATAAAACTTCCAAGGCTGAGGATGTTGAAGTGAAGGCGAGTCAGGAGGACAATCTAAAGTTACAAGAAGGTAGTGATGAGAAAGCTAGTGAGGGAACTTCTAAATCTGAAGATGCTGTTAAGGGGAAGTCTGATCAGGAAGCAGGCAATGAATGTGCTATAAATGCTCTTAAGGAAGCATTTGCTGCTGTTGGTTATTCTCCTGGACCTGAAGGACCTTCTTCATTTGCTGAAGTGGGTAATCCAGTCATGGCACTGGCAACTTTCCTTGCACACTTGGTGGGTACTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCCATGTCAAGAAATTCTCCTGGCACTGACCTTGCTGCAAGGTGTTGCTTTCTTCTCGAAGATCCACCGGATAATAAGAATGAACCAACTAGTTCTGAGAGGGATTCTAAAAGTGAGGGAGATCAGAACGAAGTAAATGTAAAGAAGGATAAACCAATGTTGGATGATAACGATTTACCAAATGATCACAATAATATGAAAATTGGAAGTAACACTTTACAAGACAAGGGACAGCCGGCTTCCACAGAAGATGCATCCTCAGAAAAGGCAATTTCTTCAAAGGAGCAACCAATGGTTAATCATGAGAGTGGGCTTGACAATTGCAATGTAATCAATGCAAAGCTATCCGACGATCAAGCACCAGACACTCTGCATAATTCAGGTGGTTCAACATCCAAGGATGAAACTAAATCTAATTCTGACCAGGTTCAGAAGGGAACCTTAATTGAAGAACCTACTTCTGCAAAGGGCATTTGCGTGTCTGATTCTCTTCCATCAGAGAAGAAAGAACTTCAGTCACTTAAAGACAATTTATCAGAAGAGCAGCCAAAGCTGATAGAGACATCAAAATGTGAGATAGTCTCTGACTCTACTCCCCCAACTAAGAACAAGTCTCAAAATCCACAATCTGCAAATCCAGTTTGTGAATCTGTAGAAACAAAAGATTCAGCCATGGATGTTGATGGAGTTTCTAATTCCTTGTCATCGGACAAGGTTGACTCTCAAGCACTAGTTACAACAAAATCATCCCAGTGTAATGGTACAGAAATAGATGTAGATATGATGTCACCATCAAATCCAGTTAGACCAAATTCTGGTGCTGAAAATGGTGCAAATACAGGAACAGGTAAAGATCATGCAGATAATGGAGCAAAAGTGGAAGATAATGATACAAGGATTAAACAAGACAGCAATTTTGAAAAAATGAAACGAGCTGCAGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAAGTTCTAGCAAATCAGGAAGAAGACCAAATCCGACAGCTTACTTCCTTGTTGATAGAAAAACAGTTGCTCAAGTTGGAAACTAAGTTGGCTTTTTTCAATGATGTGGAGAACGTGGTGTTGAGGGCAAGGGAGCATGTAGAGCGATCAAGGCATAAGCTTTATCATGAGCGTGCTCTGATTATTGCATCGCGGCTTGGTATACCAGCTTCCTCATCTAGAGGTGTACCAGCAACTGTATCAACTAATAGAATTCCTACAAATATTGCAAACTCACTCCCAAGACCACAAATGATGATGAGTCCACAGAGGCCACTTATTTCTAGACCTGCAGGCACTGTAGCTACTACTCTGCAAAACCCATTAGCATCTTCGACTGCAGCAGGAAATTCAGTTCGGCCATCTAACCAGGAAAAACTTTCTTCTGTTGGGACAAAATAA 3096 0.448 MEEKRRDAAPSAADSPASEPASSRRRAGGNKRKSAALNASGSSSAPSKRAARDKASPLHPPPLHNGPLTRARQTPNSVAASSSAGASTPAAVKHSERTHLSAADSAALAEQLRKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWFSWLYIHEIEKQMLPSFFNGKIENRTPDVYMEIRNWIMKKFHSNPNVQIELKDMSQLNVGDMEARQEVMEFLDYWGLINFHPFPSMDSAVVTAMEDDGDAEKSSLLEKLYHFETLQLCRPVQRSSQMTPATASGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCSDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCISYFVQMPIEDTFAEFEDNVDAGCKEPTDPVATNNDSSVGKDASECIENDTSDQDKTSKAEDVEVKASQEDNLKLQEGSDEKASEGTSKSEDAVKGKSDQEAGNECAINALKEAFAAVGYSPGPEGPSSFAEVGNPVMALATFLAHLVGTDVAVASAHSSIKSMSRNSPGTDLAARCCFLLEDPPDNKNEPTSSERDSKSEGDQNEVNVKKDKPMLDDNDLPNDHNNMKIGSNTLQDKGQPASTEDASSEKAISSKEQPMVNHESGLDNCNVINAKLSDDQAPDTLHNSGGSTSKDETKSNSDQVQKGTLIEEPTSAKGICVSDSLPSEKKELQSLKDNLSEEQPKLIETSKCEIVSDSTPPTKNKSQNPQSANPVCESVETKDSAMDVDGVSNSLSSDKVDSQALVTTKSSQCNGTEIDVDMMSPSNPVRPNSGAENGANTGTGKDHADNGAKVEDNDTRIKQDSNFEKMKRAAVSTLAAAAVKAKVLANQEEDQIRQLTSLLIEKQLLKLETKLAFFNDVENVVLRAREHVERSRHKLYHERALIIASRLGIPASSSRGVPATVSTNRIPTNIANSLPRPQMMMSPQRPLISRPAGTVATTLQNPLASSTAAGNSVRPSNQEKLSSVGTK* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 752 778 - -
Pvu11g0474 1031 CDD SANT 381 406 IPR001005 -
Pvu11g0474 1031 ProSiteProfiles Myb-like domain profile. 357 407 IPR001005 -
Pvu11g0474 1031 ProSiteProfiles SWIRM domain profile. 140 237 IPR007526 GO:0005515
Pvu11g0474 1031 Pfam SWIRM-associated region 1 877 954 IPR032451 -
Pvu11g0474 1031 Pfam Zinc finger, ZZ type 305 340 IPR000433 GO:0008270
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 445 498 - -
Pvu11g0474 1031 CDD ZZ_RSC8 306 350 IPR041984 -
Pvu11g0474 1031 Gene3D - 300 349 IPR043145 -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 729 748 - -
Pvu11g0474 1031 Gene3D - 146 231 IPR036388 -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 1004 1031 - -
Pvu11g0474 1031 Pfam Myb-like DNA-binding domain 363 405 IPR001005 -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 429 444 - -
Pvu11g0474 1031 Pfam SWIRM domain 143 228 IPR007526 GO:0005515
Pvu11g0474 1031 ProSitePatterns Zinc finger ZZ-type signature. 308 334 IPR000433 GO:0008270
Pvu11g0474 1031 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 360 399 IPR017930 -
Pvu11g0474 1031 ProSiteProfiles SANT domain profile. 364 411 IPR017884 -
Pvu11g0474 1031 SUPERFAMILY Homeodomain-like 360 412 IPR009057 -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 787 844 - -
Pvu11g0474 1031 SMART zz_5 302 346 IPR000433 GO:0008270
Pvu11g0474 1031 ProSiteProfiles Zinc finger ZZ-type profile. 303 357 IPR000433 GO:0008270
Pvu11g0474 1031 SUPERFAMILY Homeodomain-like 147 229 IPR009057 -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 423 500 - -
Pvu11g0474 1031 Gene3D - 360 411 - -
Pvu11g0474 1031 SMART sant 361 409 IPR001005 -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 69 89 - -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 35 49 - -
Pvu11g0474 1031 PANTHER SWI/SNF COMPLEX-RELATED 41 995 - -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 580 856 - -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 1 103 - -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 587 623 - -
Pvu11g0474 1031 MobiDBLite consensus disorder prediction 624 710 - -
Pvu11g0474 1031 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 41 995 - -
Pvu11g0474 1031 SUPERFAMILY RING/U-box 298 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0474 Pvu-Chr11 3960721 3967881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0474 306 403 EF-hand Containing Proteins AT3G07740 36.207 7.25e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0474 K11649 - gmx:100799723 1569.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0474 11 3960721 3967881 Pvu11g0474 11 3960721 3967881 ECH