Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0455 ATGGGGAAAGCGAAGGGGAAGCACCGTTTGGACAAGTACTATCACTTAGCGAAAGAGCATGGTTACAGGTCTCGAGCATCATGGAAGCTGGTCCAGCTCAATTCCAAGTTCCAATTCCTCGAGTCCGCACGCTCCGTCCTCGACCTTTGCGCCGCCCCCGGAGGCTGGATGCAGGTGGCTGTGCAGCGCGTCCCCGTAGACCACCTCGTCATCGGCGTGGACCTGGCACCCATCGCGCCCATCCGCGGTGCCATCGCCATCCAGGAAGACATCACCAAAACAGAATGCAAGTCCCGCATCAAGAAGCTCATGGGCCAGCACGGATGCCGCGCCTTTGACGTCATTTTGCACGACGGCTCTCCCAATATCGGCGGCGCCTGGGCTCAGGAAGCCATGAGCCAGAATGCCCTCGTCATCGATGCCGTCAGATTAGCTACTCAGTTCTTAGCGCCCAAGGGTATCTTTGTCACCAAAATTTTCAGGTCGCAAGATTACAGCTCCGTGGTCTATTGCCTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCTGCGGCTAGTCGATCTGAATCTGCTGAGATATATGTTTTGGGGCTTAGGTACAAGGCTCCTGCCAAGATTGATCCGCGACTTCTTGATGTGAAGCATCTCTTTCAGGGGTCTGTGGAACCGCAGCCTAAGGTGGTGGATGTACTTAGAGATACTAAGCAGAAAAGGCATCGTGACGGTTATGAAGATGGAAACACTACTTTAAGGAAGATGTCTTCAGCTTCAAATTTCATTTGGTCAGATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCTATCACCTTTACTGATGCAGCTGATTTACCAATCAAGGATCATGAGCAAACAACTGAAGAGGTCAAATCTCTCTGCGACGATTTAAGGGTTTTGGGGAAGCAAGATTTCAAGCATCTTCTAAAGTGGAGGATTCACATTAGAAAAGCTCTTTCACCAACTCAAAAGCCTGATCCTACTACTAAAGAACAGACAAAAACTGAGCAGAAGGTGGATGAAGAAGATATATTACTCAATGAAATGGAGGAGCTGACTAATGTGATGGACCGCAAGAAGAAACATGCAAAGAAGCTTCTTGCTAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAGTTGAAGATGGTTATGTAGATCAGGAGTTGTTTTCTCTCGCCTCTATAAAGGGTAAGAAAGATCTGGTAGCTGTTGACAACACTGAGTATGAAGGTGACGAGGGTGAAGTAGAAGATAGTGAGAATGAAGATATCCATGAAATCCCAGGGCGTTCATCCAGTGACTTGGAAGATTCTGATGAGGAGCGTAAAAGATACAATGAGCAAATGGAAGATTTGTTGGATAAAGCTTATGAGAAGTTTGTCATCAGAAAGGAAGGAAGTTCAAAGCAGCGGAAGCGAATTAAAAAATCCTATGATGCAGACGCCGAACTTTTGGAGGGCGGTGAGGATGATATTGCTCAATCTATGTATGATTCGGATGAAGATCAGGGTGAGCAAGAAGCAAATCCATTGATGATGCCACTTAATGACGGTGCTGAACTCACCCAAGAGGAGATAACAAATAAGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGCAGAGGAAGGAGACTTTGAGAAGGATGAGAGTAAAGATGAAATGGATGTAGATGATGAGCCTAAGGAGAAGAAATCCATTGCCAAAAAGGTCAAAGAAAATAAAACAGCAGCTCCTGCAGTGGAGGATCACCCTGAACCTCAAGCATCATCCAAGAAAGCAGATGATTTTGAAATAGTTCCTGCGCCTGCCACTGATTCAAGTGATGATGATTCATCCTCTGATGAGTCGGAGGAAGATATCGAAGCCAAAGCTGAGATATTGGCTTATGCTAAGAAGTTGGTGAGAAAAAAACAACGAAATCAGATATTGGATGATGCATATAACAAGTACATGTTTGATGACGAAGGATTGCCCAAGTGGTTTCTAGATGAAGAGAAGAAACACCGCCAACCAGTAAAGCCTATTTCGAAAGAGGAAATGGCTGCAATGAAAGCGCAATTTAAAGAAATTGATGCCCGGCCTGCAAAGAAGGTGGCGGAGGCCAAAGCACGAAAGAAGCGTGCTGCAATGAAGAAGCTTGAGAAGGTACGGAAGAAGGCGAATGCCATATCAGATCAAACAGAGATATCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTCTATAAAAAGGCTGTTCCGAAGAGGCCTAAAAAGGAATATGTAGTTGCAAAGAAAGGTGTACAAGTAAAGACTGGCAAAGGAAAAGTCCTTGTTGATCGAAGAATGAAGAAGGATGCTAGGAAACGTGGACAGGGTAGGGGAGGAAAAGGAGGTTCCAAGGCGAAGAAGGGAGGCAAGGCTCCAAAGGGCAAAGGAGCTTCTAAGGCCTCCTCTGCCAAAAAGGGAAAACAGAGGACTAAGGAATAA 2508 0.4593 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFQFLESARSVLDLCAAPGGWMQVAVQRVPVDHLVIGVDLAPIAPIRGAIAIQEDITKTECKSRIKKLMGQHGCRAFDVILHDGSPNIGGAWAQEAMSQNALVIDAVRLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDTKQKRHRDGYEDGNTTLRKMSSASNFIWSDSPLEILGSVTSITFTDAADLPIKDHEQTTEEVKSLCDDLRVLGKQDFKHLLKWRIHIRKALSPTQKPDPTTKEQTKTEQKVDEEDILLNEMEELTNVMDRKKKHAKKLLAKRRAKDKARKATGMQMDAVEDGYVDQELFSLASIKGKKDLVAVDNTEYEGDEGEVEDSENEDIHEIPGRSSSDLEDSDEERKRYNEQMEDLLDKAYEKFVIRKEGSSKQRKRIKKSYDADAELLEGGEDDIAQSMYDSDEDQGEQEANPLMMPLNDGAELTQEEITNKWFSQDVFAEAAEEGDFEKDESKDEMDVDDEPKEKKSIAKKVKENKTAAPAVEDHPEPQASSKKADDFEIVPAPATDSSDDDSSSDESEEDIEAKAEILAYAKKLVRKKQRNQILDDAYNKYMFDDEGLPKWFLDEEKKHRQPVKPISKEEMAAMKAQFKEIDARPAKKVAEAKARKKRAAMKKLEKVRKKANAISDQTEISDRSKRKQIEQLYKKAVPKRPKKEYVVAKKGVQVKTGKGKVLVDRRMKKDARKRGQGRGGKGGSKAKKGGKAPKGKGASKASSAKKGKQRTKE* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0455 835 MobiDBLite consensus disorder prediction 478 632 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 567 605 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 497 518 - -
Pvu11g0455 835 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 803 IPR028589 GO:0008649|GO:0031167
Pvu11g0455 835 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 421 460 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 793 816 - -
Pvu11g0455 835 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Pvu11g0455 835 MobiDBLite consensus disorder prediction 421 435 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 325 344 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 478 496 - -
Pvu11g0455 835 Coils Coil 355 375 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 552 566 - -
Pvu11g0455 835 Coils Coil 709 739 - -
Pvu11g0455 835 CDD AdoMet_MTases 46 161 - -
Pvu11g0455 835 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 803 - -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 728 771 - -
Pvu11g0455 835 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 803 - -
Pvu11g0455 835 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Pvu11g0455 835 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Pvu11g0455 835 Pfam Spb1 C-terminal domain 603 796 IPR012920 GO:0005634|GO:0006364|GO:0008168
Pvu11g0455 835 MobiDBLite consensus disorder prediction 716 835 - -
Pvu11g0455 835 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Pvu11g0455 835 MobiDBLite consensus disorder prediction 436 460 - -
Pvu11g0455 835 Coils Coil 448 468 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0455 K14857 - gmx:100790741 1269.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0455 11 3814487 3819658 Pvu11g0455 11 3814487 3819658 ECH