Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0442 ATGGCAAGTGATTCTTTTGTGATTTCCAATGGCAATGGAAATGGAAATGGAAATGGCAATGGCGATGGCAATGGAAATGGGAAGTCAGAGCCTCTTCCACAGAGGACTTACCAAGCAGTAGTGATTGCGACGAGAGATATGGGCATTTCTAAGGATGGAAAATTGCCCTGGATGTTACCCACTGATCTCAAATTTTTTGATGAGATCACTACTATAACGTCTGATCCGGGGAAGAAGAATGCTGTTGTGATGGGTAGAAAAACATGGGAGAGTATCCCTCCTGAGAACAGGCCTCTTCCTGGTCGCCTTAATGTTGTTCTGACTCGCTCGGGTAGCTTTGACATTGCAACTGCAGAGAATGTTGTCATATGTGGAAGTGTCTCTTCTGCTATGGAACTGTTGGCTGCTTCTCCGTACTGTCTGTCAATTGAGAAAGTATTTCTTACAGGAGGTGGTGAGATTTTCAGAGTGGCTCTTAATGCACCTGGATGTGAAGCTGCCCATATTACAGAAATTGAGGCAAGCATTGAGTGTGACGTTTTTATGCCTCGAGTTGATACCTCTCTATTTCAGCCATGGTATTCATCATTTCCTTTGGTGGAAGACAACCTCCGCTATTCTTTCACCACTTATGTGCGTGTAAGGAGTTCTCCGGCAGACTCCCTGGGTCAGAATGCTGATCCATTTTCTGATAATGATTCCGACTCTTTAAAATTTGAGGTCGATAAAATTTCTTTTCTTCCAAACTTCATTTATGAAAGACATGAGGAGTTTAAGTATCTAAGGTTGGTTCGAGAAATTATTTCTGAAGGCACAATTAAGGATGATAGGACAGGGACTGGTACCTTGTCGAAATTTGGCTGCCAGATGAGGTTTAATCTGCGCAGAAACTTTCCGCTTCTAACAACCAAGAAAGTATTTTGGCGCGGGGTTGTTGAGGAGCTTCTTTGGTTTATCAGCGGCTCAACAAGTGCCAAGGTGCTGCAAGAAAAAGGCATTCATATCTGGGATGGCAATGCATCTAGAGAATACCTTGATAGCATTGGTTTGAGAGAAAGGGAGGAGGGTGACTTAGGACCTGTTTATGGGTTTCAGTGGAGGCACTTTGGAGCCAAGTATACTGACATGCATGCCGACTACTCTGGCCAAGGATTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCAGAATCCTGATGATCGTCGGATCATTCTTTCAGCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCCCCCTGCCACATGTTTGCACAGTTTTACGTAGCAAATGGGGAATTATCGTGTCAAATGTATCAGCGATCTGCGGACATGGGCCTGGGGGTGCCATTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGACCTTGTTCCGGGTGATTTTAATCATGTTATCGGGGATGCACATGTTTACCGCAATCATGTGAGACCTTTGCAGGAACAGCTTCAGAATCAACCAAAACCTTTTCCGATTTTGAAGATAAACCCGAAGAAGAAAGATATAGATTCTTTTGTGGCTGCCGATTTGAAGCTCATAGGATATGACCCTCACCAGAAGATAGAAATGAAGATGGCTGTTTAG 1623 0.4325 MASDSFVISNGNGNGNGNGNGDGNGNGKSEPLPQRTYQAVVIATRDMGISKDGKLPWMLPTDLKFFDEITTITSDPGKKNAVVMGRKTWESIPPENRPLPGRLNVVLTRSGSFDIATAENVVICGSVSSAMELLAASPYCLSIEKVFLTGGGEIFRVALNAPGCEAAHITEIEASIECDVFMPRVDTSLFQPWYSSFPLVEDNLRYSFTTYVRVRSSPADSLGQNADPFSDNDSDSLKFEVDKISFLPNFIYERHEEFKYLRLVREIISEGTIKDDRTGTGTLSKFGCQMRFNLRRNFPLLTTKKVFWRGVVEELLWFISGSTSAKVLQEKGIHIWDGNASREYLDSIGLREREEGDLGPVYGFQWRHFGAKYTDMHADYSGQGFDQLLDVINKIKQNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLVPGDFNHVIGDAHVYRNHVRPLQEQLQNQPKPFPILKINPKKKDIDSFVAADLKLIGYDPHQKIEMKMAV* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0442 540 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 21 540 - -
Pvu11g0442 540 PRINTS Thymidylate synthase family signature 298 319 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 PRINTS Thymidylate synthase family signature 391 410 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 PRINTS Thymidylate synthase family signature 417 432 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 PRINTS Thymidylate synthase family signature 435 461 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 PRINTS Thymidylate synthase family signature 473 490 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 Gene3D Dihydrofolate Reductase, subunit A 24 215 IPR024072 -
Pvu11g0442 540 PIRSF DHFR-TS 23 540 IPR012262 GO:0004146|GO:0004799|GO:0006730
Pvu11g0442 540 CDD DHFR 39 212 IPR001796 GO:0004146|GO:0046654
Pvu11g0442 540 ProSitePatterns Thymidylate synthase active site. 402 430 IPR020940 GO:0004799|GO:0006231
Pvu11g0442 540 CDD TS_Pyrimidine_HMase 260 493 IPR023451 -
Pvu11g0442 540 PANTHER THYMIDYLATE SYNTHASE 1 21 540 IPR045097 GO:0016741
Pvu11g0442 540 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 36 213 IPR001796 GO:0004146|GO:0046654
Pvu11g0442 540 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 249 540 IPR036926 -
Pvu11g0442 540 Pfam Thymidylate synthase 259 540 IPR023451 -
Pvu11g0442 540 Hamap Thymidylate synthase [thyA]. 257 540 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 TIGRFAM thym_sym: thymidylate synthase 259 540 IPR000398 GO:0004799|GO:0006231
Pvu11g0442 540 MobiDBLite consensus disorder prediction 1 32 - -
Pvu11g0442 540 SUPERFAMILY Dihydrofolate reductase-like 37 213 IPR024072 -
Pvu11g0442 540 Pfam Dihydrofolate reductase 38 213 IPR001796 GO:0004146|GO:0046654
Pvu11g0442 540 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 250 540 IPR036926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0442 Pvu-Chr11 3747123 3752409 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0442 K13998 - gmx:100786311 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0442 11 3747123 3752409 Pvu11g0442 11 3747123 3752409 ECH