Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0440 ATGTCCGGCCCTCTCGACCGTTTCGCCAGACCATGTTTCGAAGGTTTCTCCGGGAGCGATGAGAAGAAGGAGCGGAGATCTGATTTTGAGAACTCCGAGGACGAACGGAGGACCAGAATCGGATCTCTCAAGAAGAAGGCGCTGAATGCGTCGTCCAAGTTCAAGCACACGCTGAAGAAGAAGAGCAGCAGAAGGAAGAGCGATGGCCGTGTCAGCTCTGTTTCCATTGAGGATGTTCGGAATTTCGAGGAGCAGCAGACCGTTGATGCATTTCGCCAATCCTTGATCATCGACGAATTGCTCCCTGGAAAACACGATGACTACCACGTTATGTTAAGGTTCCTGAAAGCGAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGCTGATATGCTACAATGGAGAAAGGAGTTTGGTGCTGACACTATTATAGAGGATTTTGAGTTCGTAGAATTAAATGAAGTTATGAAGTATTATCCGCATGGCCATCACGGTGTCGATAGGGAGGGAAGGCCTGTTTACATTGAGAGACTTGGGAAAGTGGATCCGAACAAACTTATGCAGGTTACGACCATGGATAGATATGTGAGATACCATGTACGGGAATTTGAGAAAGCTTTTAAGATAAAATTTCCTGCTTGCACAATTGCCGCCAAAAGGCACATAGATTCAAGCACCACGATATTAGATGTTCAGGGCGTGGGCCTCAAGAACTTTACAAAGTCTGCTCGGGAACTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTTTGTCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGGTTACTGTGGAACACCGTCAAGTCTTTCCTTGATCCCAAAACAACTTCAAAGATCCATGTTCTTGGAAATAAGTATCAAAGCAAATTGCTTGAAGTAATCGATGCCAGTGAGTTGCCGGAATTTCTGGGAGGTACCTGTACATGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGATGATTCTTAGTGGCGAAGCACGAAGAGCAAGGCCTGTGGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCATATGCCAGCCCACAATACCCAATGGTAAAAGGAAGTGACACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATTGCTTCTCCAAAAGCGATGAAGAGCTACTCTCACTTGAGGTTGACACCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAAGTCAAGCTATGTTGGTGGTAGTATCTTGGCTGGGTATGATGAATATGTTCCGATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAACAAGCATCACTGAGGGCTCAAACTTCAAAAGGAACACCTTCCCTCCCTAACCCTCCAAAAACTCCCGAAGGGATTCAAGCTCGGATGGTGGTGGCTCTAACTGCTTTCTTTATGACGCTGCTTACTCTCTTCCATTCAGTTGCATACCGTGTGACCAAGAAACTTCCTGCCTCATCATCTAATGAGGATCAGTGCACGTCAGAGACACCCCTTAATACAACAACCGAAGACAATCATCCTCCTTCACCAACTCCAGCACATACAGAGGCAAAACTCCTTTCCTCAATGATGAAAAGGTTAGGCGAGCTTGAAGAGAAGGTTGACACACTCCAATCTAAACCATCTGAGATGCCTTATGAGAAAGTGGAATTGCTAAATGCTGCTGTATGTCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTGTATGAAGCATTAATGAGGCAAGAAGAGCTGCTCGCTTACATTGATAGTCAAGAAGAAGCTAAGTTGCGGAAGAAGTTTTGCTGGTGA 1878 0.4521 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHTLKKKSSRRKSDGRVSSVSIEDVRNFEEQQTVDAFRQSLIIDELLPGKHDDYHVMLRFLKARKFDIERAKHMWADMLQWRKEFGADTIIEDFEFVELNEVMKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQVTTMDRYVRYHVREFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCADQGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYASPQYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKSSYVGGSILAGYDEYVPMVDKAVDAGWKKQASLRAQTSKGTPSLPNPPKTPEGIQARMVVALTAFFMTLLTLFHSVAYRVTKKLPASSSNEDQCTSETPLNTTTEDNHPPSPTPAHTEAKLLSSMMKRLGELEEKVDTLQSKPSEMPYEKVELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEAKLRKKFCW* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0440 625 MobiDBLite consensus disorder prediction 16 42 - -
Pvu11g0440 625 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Pvu11g0440 625 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Pvu11g0440 625 Coils Coil 544 564 - -
Pvu11g0440 625 MobiDBLite consensus disorder prediction 1 42 - -
Pvu11g0440 625 MobiDBLite consensus disorder prediction 506 537 - -
Pvu11g0440 625 MobiDBLite consensus disorder prediction 455 474 - -
Pvu11g0440 625 CDD SEC14 152 321 IPR001251 -
Pvu11g0440 625 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Pvu11g0440 625 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Pvu11g0440 625 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Pvu11g0440 625 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH8 3 620 - -
Pvu11g0440 625 MobiDBLite consensus disorder prediction 506 533 - -
Pvu11g0440 625 SMART sec14_4 152 323 IPR001251 -
Pvu11g0440 625 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Pvu11g0440 625 Gene3D - 76 139 - -
Pvu11g0440 625 SUPERFAMILY CRAL/TRIO domain 153 345 IPR036865 -
Pvu11g0440 625 Pfam CRAL/TRIO, N-terminal domain 105 131 IPR011074 -
Pvu11g0440 625 Gene3D - 140 350 IPR036865 -
Pvu11g0440 625 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 3 620 - -
Pvu11g0440 625 Pfam CRAL/TRIO domain 158 320 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0440 Pvu-Chr11 3729272 3734502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0440 113 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.302 3.01e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0440 - - gmx:100785793 1108.2