Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0412 ATGGGGACTCTGAGATCGATTCTGAAGCATCCAGATGACTTTTACCCGTTGCTGAAGCTCAAAATAGCCGCCAGAAACGCTGAGAAGCAGATCCCGCCGGAGCTGCACTGGGCCTTCTGTTACACTATGCTGCACAAGGTTTCTAGAAGCTTCGCACTCGTCATTCAGCAGCTCGGCACCGACCTTCGCAACGCGGTTTGCATATTCTATCTGGTTCTTCGAGCGCTCGACACCGTTGAGGATGACACTAGCATAGCTACAGATGTCAAGGTGCCTATACTGATAGCTTTTCACCGTCATATTTATGATCGTGATTGGCACTTTTCATGTGGCACAAAGGAGTACAAAGTTCTAATGGACCAGATTCATCATGTTTCAACTGCTTTTCTGGAACTTGGAAAGAACTATCAGGAAGCAATTGAGGACATTACAAAAAGAATGGGTGCTGGCATGGCCAAATTTATTTGCAAGGAGGTTGAAACAATTGATGACTATGATGAATATTGTCACTACGTGGCTGGACTTGTTGGGCTGGGTTTATCAAAGCTCTTCCATGCCTCTGGTTCAGAAGATCTGGCTTCTGATTCCCTTTCCAATTCAATGGGCTTGTTTCTTCAGAAAACAAACATCATTCGAGATTATCTGGAAGACATCAATGAAATCCCCAAGTCACGCATGTTCTGGCCACGAGAGATTTGGAGTAAATATGTTAACAAACTCGAGGATTTGAAATATGAGGAGAACTCTGTTAAAGCAGTACAATGCTTAAATGACATGGTCACTAATGCTCTGATGCATGCTGAAGATTCCTTAATATACATGGCTGCTTTAAGAGACTCGTCTATATTTCGCTTTTGTGCTATACCCCAGATAATGGCAATTGGAACACTAGCGTTATGTTACAACAACATTGAGGTCTTCAGAGGTGTAGTTAAAATGAGGAGAGGTTTAACTGCCAAGGTGATTGACCGAACAAAGACTATGGCTGATGTCTATGGCGCTTTCTTTGATTTTGCTTCTGTGTTGGAGTCCAAGGTTGACAAAAATGATCCCAATGCCACAAAAACATTGAGCAGGCTGGTAGCTATACAGAAAAGTTGCAGAGAATCTGGTCTCTTGAGTAAAAGGAAATCATTCATTGTGAAGAATGAAAATGGATATGGCTCATTTATGATTGTCATGCTGGTCATCATGGTTTCCATCATTTTTGCCTATCTGTCTGCTAACCACCATAATAACTAG 1242 0.4235 MGTLRSILKHPDDFYPLLKLKIAARNAEKQIPPELHWAFCYTMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIATDVKVPILIAFHRHIYDRDWHFSCGTKEYKVLMDQIHHVSTAFLELGKNYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYVAGLVGLGLSKLFHASGSEDLASDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVNKLEDLKYEENSVKAVQCLNDMVTNALMHAEDSLIYMAALRDSSIFRFCAIPQIMAIGTLALCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFASVLESKVDKNDPNATKTLSRLVAIQKSCRESGLLSKRKSFIVKNENGYGSFMIVMLVIMVSIIFAYLSANHHNN* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0412 413 Gene3D Farnesyl Diphosphate Synthase 34 370 IPR008949 -
Pvu11g0412 413 ProSitePatterns Squalene and phytoene synthases signature 1. 168 183 IPR019845 GO:0016765
Pvu11g0412 413 PANTHER FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE 1 410 IPR044844 GO:0004311
Pvu11g0412 413 TIGRFAM squal_synth: farnesyl-diphosphate farnesyltransferase 36 367 IPR006449 GO:0004310|GO:0008610
Pvu11g0412 413 Pfam Squalene/phytoene synthase 45 315 IPR002060 GO:0009058
Pvu11g0412 413 SFLD Squalene/Phytoene Synthase Like 36 325 IPR002060 GO:0009058
Pvu11g0412 413 SFLD Isoprenoid Synthase Type I 36 325 - -
Pvu11g0412 413 SUPERFAMILY Terpenoid synthases 37 365 IPR008949 -
Pvu11g0412 413 ProSitePatterns Squalene and phytoene synthases signature 2. 201 229 IPR019845 GO:0016765
Pvu11g0412 413 CDD Trans_IPPS_HH 38 320 IPR033904 GO:0004311
Pvu11g0412 413 PANTHER SQUALENE SYNTHASE-LIKE ISOFORM X1 1 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0412 Pvu-Chr11 3454564 3461625 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0412 K00801 - gmx:547940 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0412 11 3454564 3461625 Pvu11g0412 11 3454564 3461625 ECH