Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0405 ATGAGAAAAATGAAGGCGTGGTGGAGGAGGCTGTTCTACGTTGCGGTGTTTGAGACGGTGTTGATCGGAATGGGAAGCGCCCACGACTATTGGGACGCATTGTCGAAGGCCATTGTTTTCTTCGAGGGACAGCGATCGGGATTCCTGCCACAGGATCAGAGAGTGAGTTGGCGAGGGAACTCCGGTCTCAGTGACGGCTGGAACTACAACACGGATCTCACCGGCGGTTACTACGACGCCGGCGACAACGTGAAATTCGGGTTTCCGATGGCCTTCACCACCACAATGCTGGCCTGGAGCGTCCTGGAATTCGGAGACGTCATGCCTCCCAATGAGCTCAGGAACGCACTCCTCGCAATTCGTTGGGCCACTGATTATCTTCTCAAGACTCTTTCTCAGCCCAATCGAATTTTCGTTCAGGTGGGTGATCCAAACTCAGATCACGATTGTTGGGAGAGGCCAGAGGACATGGATACGGCGAGGACTACGTATGCTATTGATGCACCAAACGCCGCTTCCGATGTCGCCGGCGAAACCGCCGCCGCACTAGCAGCTTCATCCATGGCGTTCCGGTCATCGGACCCCGGTTACTCGGAGACACTGCTTCGAAATGCCATTACTGCCTTTGAATTTGCAGATAACTACAGGGGTGCTTACAGTGACAATGAAAACGTGAAGTATAATGCCTGCCCCTATTACTGTGATTTCGATGGCTATCAGGATGAGCTGTTGTGGGGAGCTGCATGGCTAAGGAGGGCGACACAGGAGGATAATTTCCTAAACTACATTGAAAGCAATGGGAAAACTCTTGGTGCAGAAGACAACATCAATGAGTTTGGTTGGGACAACAAGCATGCTGGCCTCAACGTACTTCTCTCCAAGGAAGTTATAGAAGGAAACATGTACTCTCTTGAGTCCTACAAGTCCTCAGCAGAGAGGTTCATTTGCACACTGATACCTGAATCATCAAGCTCAAACATTGAGTACACACCTGGTGGGCTTGTGTACAGACCCGGAGGCAGCAACCTGCAACATGCAACTTCAATTGCTTTCCTTGAATTGGTGTATGCCAATTACCTAACACACACTTCACAAGCCATCAATTGTGGCAATGTCTATGTCAGTGCACAAACTCTTCGTCAACATGCCAAGAGGCAAGTTGATTACATTTTGGGTGAAAACCCAATGGGACTGTCCTACATGGTTGGCTATAGCAACTACTATCCTCAACGTATTCACCACCGTGCCTCTTCTTTACCCTCCATCAAGGATCATCCCCAGTTCATTGCATGCAAAGAAGGTTCAATCTACTTCAACTCAACAAATCCCAATCCTAATGTACTTGTTGGAGCCATTGTTGGAGGACCTGATGAAAATGATGATTATGAGGATGATCGAATTGATTTTAGGAAATCTGAACCTACCACGTACATTAATGCACCATTTGTTGGGGTGTTAGCATATTTTGCTGCAAATCCCAGCTTTAGTTGA 1491 0.4836 MRKMKAWWRRLFYVAVFETVLIGMGSAHDYWDALSKAIVFFEGQRSGFLPQDQRVSWRGNSGLSDGWNYNTDLTGGYYDAGDNVKFGFPMAFTTTMLAWSVLEFGDVMPPNELRNALLAIRWATDYLLKTLSQPNRIFVQVGDPNSDHDCWERPEDMDTARTTYAIDAPNAASDVAGETAAALAASSMAFRSSDPGYSETLLRNAITAFEFADNYRGAYSDNENVKYNACPYYCDFDGYQDELLWGAAWLRRATQEDNFLNYIESNGKTLGAEDNINEFGWDNKHAGLNVLLSKEVIEGNMYSLESYKSSAERFICTLIPESSSSNIEYTPGGLVYRPGGSNLQHATSIAFLELVYANYLTHTSQAINCGNVYVSAQTLRQHAKRQVDYILGENPMGLSYMVGYSNYYPQRIHHRASSLPSIKDHPQFIACKEGSIYFNSTNPNPNVLVGAIVGGPDENDDYEDDRIDFRKSEPTTYINAPFVGVLAYFAANPSFS* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0405 496 PANTHER ENDOGLUCANASE 24 12 495 - -
Pvu11g0405 496 Gene3D - 26 492 IPR012341 GO:0005975
Pvu11g0405 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Pvu11g0405 496 SUPERFAMILY Six-hairpin glycosidases 16 491 IPR008928 GO:0005975
Pvu11g0405 496 PANTHER ENDO-1,4-BETA-GLUCANASE 12 495 - -
Pvu11g0405 496 Pfam Glycosyl hydrolase family 9 30 486 IPR001701 GO:0004553|GO:0005975
Pvu11g0405 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 462 480 IPR033126 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0405 Pvu-Chr11 3408166 3411866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0405 11 492 Glycoside Hydrolase AT1G70710 59.336 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0405 K01179 - gmx:100101849 932.169