Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0403 ATGGCTTTCAACTTCACACACTCCACACTACCTCCGTCTTCTTCCGTTTCACACCATTTTCATGTTCATACTTTTTCAAAACCTTTTTTTCTTTCACATTCCAAAATCTCAACCTCTTTAATCTCCAAAACCCTTTGTCTGTGTGCATCACCTTCCAACACCATCCACTCTTCACCAACCCCCATTTTCCTCCCATATCTCCAACGAGAACCAGAACCAGAACCAGAAGAACAAGAGGTCATAGAAACAATAGAAGAAGAGAAGGAACAAGCTCGCGACCCAGATGATCCAATCTACAAATTCTTCAAAACCCGCAATAGGATTTCCTTCCAAGACCCGGGAAGAGAAGGAAGTTTGTCGCTTCAGAAGAACCGTCGCACATCATGGCACCTTGCTTCTGACACGAGTGACCCTGTTGAAGAAGAATCTGAAACGGGTTTGGAGGATGGCTCTTTGTTGGTTGAAGAAAAGAGAGAAATGGTTTGTGAGAAAAAGGGTTTGCCTTTACCTGAGGGGATTGTGGGGGAGATTATTCAGCTTGCAAGGAACTTGCCGCAGAATCTTACTCTGGAGGAGGGTTTGGTTGAATACGAAGGAAGGGTTAGTGAGAAAGAGTGTTGGGAGGTTTTGAAATCACTTGGGGAGGAGCACCTTCTGGTATCTTGTTTGTATTTCTTTCAGTGGATGAGGTCGCAGGAACCTTCACTGGTGACACCTCGGGCTTGCACTGTGTTGTTTCCTTTGTTGGGGAAGGCAAGGATGGCTGATAAGTTGATGGTTTTGTTCTCAAACTTACCATCCACCAAGGAGTTCAGAGATGCTCATGTTTACAATGCTGCAATTTCAGGCCTTCTTTCTAGTGGCAGGTATGAAGATGCTTGGAAAGTGTATGAGTCAATGGAAGCAGATAATGTTCTGCCGGATCACGTGACATGCTCTATTATGGTTATTGTTATGAGAAAACTTGGCCATAGTGCAAAAGATGCATGGCAATTTTTTGAGAAAATGAATGGAAAAGGAGTCAAATGGGGTGAAGAAGTTCTAGGTGCACTCATAAAGTCATTTTGTGTTGAGGGTTTGATGAGGGAAGCTCTCATCATCCTATCTGAAATGGAGAAGAAAGGAGTTTCTCCAAATGCTATTATGTACAACACCCTGATGGATGCATATTGTAAATCCAACTGTGTAGAAGAAGCTGAAGGCCTTCTTGTTGAGATGAAAGCTAAAGGGATTAAGCCCACTGAAGCTACGTTCAACATTCTAATGCATGCATACAGCAGAAAAATGCAGCCTAAGATTGTGGAGAAGCTGATTGCTGAAATGCTGGATGTTGGGTTGAAGCCAAATGCCAAATCATATACTTGTCTTGTCAGTGCATATGGGAAGCAGAAAAAGATGAGTGACATGGCTGCAGATACATTCTTGAAGATGAGGAAGGATGGTATTAAACCCACTTCACATTCGTATACAGCTCTGATCCATGCATATTCAGTTAGTGGCTGGCATGAGAAAGCTTATGCAGCATTTGAAAACATGCAAAGGGAAGGTGTTAAACCATCCATAGAAACCTACACTGCTTTACTAGATGCATTTAGACGAGCTGGTGATACCGAAACATTAATGAAAATATGGAAGTTGATGAGGAGGGAGAAAGTTGAAGGAACACGAGTGACATTCAATACTCTTGTTGATGGTTTTTCTAAACATGGTCACTACAAGGAAGCAAGAGATGTAATATCTCAATTTGGGAAAGTTGGATTGCATCCAACATTGTTGACATACAATATGCTGATGAATGCGTATGCGCGAGGAGGGCGACACTCAAAGCTGCCAGAGTTGTTGGAAGAGATGGCAGATCGTAACATAAAGCCAGATTCTGTAACTTATTCAACAATCATATATGCATTTATCCGCGTTCGAGATTTTGCTCAGGCATTCTTTTATCACCAGGAGATGGTCAAGAATGGTAAGGTAATGGATGCCAATTCTTACCAGAAGCTTCGGACGATTCTTGATGATAAAGCTGCAATCAAAAACAGAACGGATAGGAGATCCTTGATTGGTGTGGTTAGAAATAAGATGGGTATTGTGAAACCTAAGAGAAAAAAGGACGAGTTATGGAAGTACAGGAAAAGACATGTGAAAAAACGGTAG 2154 0.4201 MAFNFTHSTLPPSSSVSHHFHVHTFSKPFFLSHSKISTSLISKTLCLCASPSNTIHSSPTPIFLPYLQREPEPEPEEQEVIETIEEEKEQARDPDDPIYKFFKTRNRISFQDPGREGSLSLQKNRRTSWHLASDTSDPVEEESETGLEDGSLLVEEKREMVCEKKGLPLPEGIVGEIIQLARNLPQNLTLEEGLVEYEGRVSEKECWEVLKSLGEEHLLVSCLYFFQWMRSQEPSLVTPRACTVLFPLLGKARMADKLMVLFSNLPSTKEFRDAHVYNAAISGLLSSGRYEDAWKVYESMEADNVLPDHVTCSIMVIVMRKLGHSAKDAWQFFEKMNGKGVKWGEEVLGALIKSFCVEGLMREALIILSEMEKKGVSPNAIMYNTLMDAYCKSNCVEEAEGLLVEMKAKGIKPTEATFNILMHAYSRKMQPKIVEKLIAEMLDVGLKPNAKSYTCLVSAYGKQKKMSDMAADTFLKMRKDGIKPTSHSYTALIHAYSVSGWHEKAYAAFENMQREGVKPSIETYTALLDAFRRAGDTETLMKIWKLMRREKVEGTRVTFNTLVDGFSKHGHYKEARDVISQFGKVGLHPTLLTYNMLMNAYARGGRHSKLPELLEEMADRNIKPDSVTYSTIIYAFIRVRDFAQAFFYHQEMVKNGKVMDANSYQKLRTILDDKAAIKNRTDRRSLIGVVRNKMGIVKPKRKKDELWKYRKRHVKKR* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Pvu11g0403 717 PANTHER - 1 715 - -
Pvu11g0403 717 Pfam Pentatricopeptide repeat domain 437 496 IPR002885 -
Pvu11g0403 717 Pfam Pentatricopeptide repeat domain 509 564 IPR002885 -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Pvu11g0403 717 PANTHER OS03G0856100 PROTEIN 1 715 - -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Pvu11g0403 717 Gene3D Tetratricopeptide repeat domain 176 325 IPR011990 GO:0005515
Pvu11g0403 717 Pfam PPR repeat family 378 426 IPR002885 -
Pvu11g0403 717 Pfam PPR repeat family 273 316 IPR002885 -
Pvu11g0403 717 Pfam PPR repeat family 590 636 IPR002885 -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Pvu11g0403 717 Pfam PPR repeat 350 376 IPR002885 -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 659 IPR002885 -
Pvu11g0403 717 Gene3D Tetratricopeptide repeat domain 467 583 IPR011990 GO:0005515
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 487 520 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 350 380 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 627 660 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 593 626 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 452 485 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Pvu11g0403 717 TIGRFAM PPR: pentatricopeptide repeat domain 523 553 IPR002885 -
Pvu11g0403 717 Gene3D Tetratricopeptide repeat domain 584 658 IPR011990 GO:0005515
Pvu11g0403 717 Gene3D Tetratricopeptide repeat domain 326 443 IPR011990 GO:0005515
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 484 IPR002885 -
Pvu11g0403 717 MobiDBLite consensus disorder prediction 129 150 - -
Pvu11g0403 717 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0403 Pvu-Chr11 3393385 3396918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0403 249 667 Glycosyltransferase AT1G05670 25.952 1.55e-45 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0403 - - ccaj:109799145 1182.93