Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0362 ATGGAAACACGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACAACCCGTTCAAGCAAGCGCGCGCGTCTCTCTTCTTCTTCCTCTGCTTCTGCCGCCGCCACCGCCACCGCATCTCTTTCTTCTGTCAACACTCGCTCCCGTGGATCCAGAACTAAGGAACAACCCTTACCTCCGAAGAATCCTCCTCCCATGGACTCTGCCAATGAATCATCAGGTTCTCGACGTGATCGCCGCAGCAAGGACAACTCCGACAAGGGTAAGGAGAAAGAACACGATGTTAGGATTAGGGACAGAGATGCTGACAGAGGGCTGTCATTGAACATGGATGGTGGTGCGGAAGATGACGATAATGACAGTGAAGGTGGTGTGGGGATTTTGCATCAAAATCTGACCTCTGCGAGTAGTGCACTTCAGGGGCTTCTTCGGAAGCTTGGTGCTGGGTTGGATGATCTTCTCCCATCCTCTGCCATGGGTTCTGCATCTTCCTCTCACCAGAACGGGAGGCTGAAAAAGATCCTTTTTGGATTGCGAGCGGACGGCGAAGAAGGGCGGCAGGTTGAAGCGTTGACGCAACTCTGTGAAATGCTTTCAATTGGGACCGAAGAGTCGCTTAGTACATTCTCAGTTGATTCGTTTGTTCCTGTGCTTGTGGGTTTGTTGAATCACGAGAACAATCCCGACATCATGCTTCTTGCTGCAAGAGCATTAACCCATCTCTGCGACGTGCTACCTTCATCTTGTGCTGCGGTTGTTCATTATGGTGCAGTTTCAATCTTCTGCGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCTACTGGAGTTCAGCGGGTTGCATTGTCCACTGCTGCAAATATGTGCAAGAAACTTCCTTCAGATGCATCTGATTTTGTGATGGAAGCTGTTCCGCTTCTGACAAACCTTCTTCATTATCACGATGCCAAGGTTCTAGAGCACGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCGTTTGCGTCATCTCCTGACAAACTAGATGAATTGTGCAACCATGGACTGGTAACACAAGCTGCCTCCCTCATCTCTAACAGCAGTTCTGGAGGGGGTCAAGCTTCTCTCAGCACACCAACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACTTTACTGCTACTCGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTATCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCCCCGGAGCAGATATTTGAGATTGTAAACCTGGCAAATGAGCTCCTTCCCCCATTGCCACAAGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCCATTGTAAGGAAGTCTCCCGCTGGTAGCTCTGGGAAACAAGAAGATTCAAATGGAACTGTTCCTGAGATATCAGCCCGTGAGAAATTATTAAATGACCAGCCTGAACTACTTAGGCAATTTGCCATGGATCTTCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTATTGAGTGTGACCAATATATCAAGTTTCTTAGCTGGGGTCCTAGCATGGAAAGATCCACATGTGCTGGTACCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTACCGGGAAATTCAACCAATATCTCTACTCAGGCATCTTCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGCAGTGGAAGTTCCAATCCTGATGGAAATCCTTTGGACGATTTGAAGGCTCCTGTTTCAGTAAATGTTGGTTCGCCTCCAAGTTCTGTGGAGATTCCAACAGTAAATTCCAGTATTCGTTTGTCTGTTAGTACAGCTGCAAAAGCTTTTAAAGATAAGTACTTTCCTTCGGATCCTGGGGCTTCGGAAGTGGGTATTACTGATGATCTTTTGAATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCGGATGAACAAGGGACCATTGGAAAGGGGAAATCTAAATCTTCTGGATTTGTTCTGGAAGAGTATTTAATCGGGGTCATAGCTGACATGCTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTTGTTGCAGCTTTGTTGAATTACTTTTCTTGTGGGTACTTCTCTAAAGATAAATCTTTAGAAACCCACCTTCCAAACCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCTCTACCTTCCTCAACTGAGGTTGGGACTGTGACTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCCTTGTCCTCTTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCCAGGTCATCAAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCATCCCTTCAAGTTGCGGCTTTGTCGAGCTCAGGGTGAAAAGTCACTTAGGGATTATTCATCAAATGTTGTTTTGGTTGATCCGTTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGTCTCGTATCCAGCGAAGTGAATCTGGTCAGAAGTTCACTGTACCTGCTGGTCATTCTGAATCAGGGACAACTCCTGCAGGAGGTGGTGTATCCTCTCCTTCCACCACCCGTCGTCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGACACATCTAGAAAGGAAATACTTCAAGATAAAAGCACTAGCTCTTCTAAGGGTAAGGGAAAAGCTGTATTAAAGCCCGCGCAAGCGGAGTCAAGAGGACCTCAAACAAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGAGGCTCAAGCAAAGCCTGTAAACGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGAGATTTCTGATGATGAAGATGATGACCATGAAGATGTTCTGAGGGATGATTCTCTTCCGTTGGTATGCTCTCCTGACAAAGTACATGATGTGAAATTGGGAGACTTGGCTGAGGAGAGTACTGTTGCTCCTGCAACAAGTGATGGCCAGGCTAATGCTGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGTGAGGGGATCAGACTCTGCAGATTTTAGGAGTGGCTATACATCAAGTTCAAGAGGCGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGTCAATAACAGAGGTATCAGGGGTGGAAGAGACAGACTAGGTCGTCCATTGTTTGGTAGTTCTAATGATCCTCCTAAGTTGATCTTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAAAGACAGCTTGTGCATGATGAAGATGATGACGAGAGATTTGCTGGCAGTAATGACTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAAGTCAGAGAACCAAACAGATAGAGCTACCCCTGGAGGTTCAAGCTCTAATGCGTCAAAATCTGGCAAATCTGCATCAAATTCTGGATCTGAAGCCAAGCTACATCAGACATCTGTATTAGATAGCATCTTGCAGGGTGAATTGCCCTGTGAATTGGAGAAATCTAATCCTACGTACAATATATTGGCATTATTGAGGGTGCTAGAGGGTTTGAACCAACTTGCGTCTCGTTTGAGGGCCCAAGTGGTTACTGATAACTTTGCAGAGGGAAAAATTTTGGATTTAGATGAGCTAAGTATTACCGTTGGTGCTAGGGTTCCTGCAGAGGAATTTATAAGCAGCAAACTTACTCCGAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTATGCAGTGGGAGTCTTCCTTCATGGTGTTACCAGCTATCTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACCCGGAGACAGTACTTCTATTCAACTGCATTTGGGTTGTCTCGTGCACTGTATCGCCTTCAGCAGCAACAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGATCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTATCTCGAAATCGCATTTTGGATTCTGCTGCCAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTGCTTGAAGTAGAATATTTTGGCGAAGTTGGCACTGGTCTGGGTCCCACCTTGGAGTTCTACACACTTCTCAGTCATGACATACAAAGAGTTGCACTTCGAATGTGGAGATCAGGTTTTTCAGAGAAATATCCAATGGAAATTGATGGAAATGAAAGGAAAATGAAAAGTAGCGAAGGCTCTTTTGCTGGAGATGGAGAACTTGTTCACTCTCCTCTTGGACTTTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCAGAGGGTACCCAATTTTCTAAAGTTATTGAATATTTCCGGCTATTAGGTCGTGTAATGGCTAAAGCCCTCCAAGATGGACGCCTATTGGATTTACCACTATCAGCGGCATTTTATAAGCTTGTTCTCGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCGGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTCCCGGAAACGTTATATCGAATCTTTTGGTGGTTGCTATACTGATACAATTGGTAATTTACATTTTCGTGGGGCTCCAATTGAAGATCTCTGCTTGGACTTTACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGAAATTGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTCGAGGCAACTGTTAAGGCTGGAGTCATGCGTCAGATGGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGAAATCTCATCTTTGCAAATTTTTACTCCCCAAGAACTGGACTACCTGCTTTGCGGCCGTAGAGAATTGTGGAAGACTGAAACACTTGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCAGCCATAGTTAATTTACTAGAAATCATGGGAGAATTCACGCCAGAACAGCAGAGAGGTTTCTGTCAATTTGTTACTGGTGCACCTAGATTGCCACCTGGTGGACTGGCAGTTCTAAATCCAAAACTAACAATTGTGAGAAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAATCAGCGGATGATGACTTGCCTAGTGTGATGACGTGTGCAAATTACCTGAAACTTCCTCCTTATTCTAGCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATCTATCGTGA 5637 0.4476 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAATATASLSSVNTRSRGSRTKEQPLPPKNPPPMDSANESSGSRRDRRSKDNSDKGKEKEHDVRIRDRDADRGLSLNMDGGAEDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQNGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHENNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLHYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPIISNMFLKGPIVRKSPAGSSGKQEDSNGTVPEISAREKLLNDQPELLRQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILPGNSTNISTQASSAEKDNDSISGASSRSRRYRRRSGSSNPDGNPLDDLKAPVSVNVGSPPSSVEIPTVNSSIRLSVSTAAKAFKDKYFPSDPGASEVGITDDLLNLKNLCMKLNAGADEQGTIGKGKSKSSGFVLEEYLIGVIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDKSLETHLPNLRQQALTRFKLFIAVALPSSTEVGTVTPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSHPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFLWSRIQRSESGQKFTVPAGHSESGTTPAGGGVSSPSTTRRHSTRSRSSVNIGDTSRKEILQDKSTSSSKGKGKAVLKPAQAESRGPQTRNATRRRAALDKEAQAKPVNGDSTSEDEDLDISPVEIDEALVIEDDEISDDEDDDHEDVLRDDSLPLVCSPDKVHDVKLGDLAEESTVAPATSDGQANAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSVNNRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVHDEDDDERFAGSNDYVSSDGSRLWGDIYTITYQKSENQTDRATPGGSSSNASKSGKSASNSGSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDNFAEGKILDLDELSITVGARVPAEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREIRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDIQRVALRMWRSGFSEKYPMEIDGNERKMKSSEGSFAGDGELVHSPLGLFPRPWPANADASEGTQFSKVIEYFRLLGRVMAKALQDGRLLDLPLSAAFYKLVLGQELDLHDILFIDAELGKTLQELNALVSRKRYIESFGGCYTDTIGNLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKAGVMRQMEAFRAGFNQVFEISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRGFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSESADDDLPSVMTCANYLKLPPYSSKEIMYKKLLYAISEGQGSFDLS* 1879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0362 1878 ProSiteProfiles HECT domain profile. 1578 1878 IPR000569 GO:0004842
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 1261 1291 - -
Pvu11g0362 1878 Pfam HECT-domain (ubiquitin-transferase) 1542 1878 IPR000569 GO:0004842
Pvu11g0362 1878 Gene3D - 188 659 IPR011989 -
Pvu11g0362 1878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 221 249 IPR000225 GO:0005515
Pvu11g0362 1878 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 53 1878 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 80 114 - -
Pvu11g0362 1878 SMART hect_3 1468 1878 IPR000569 GO:0004842
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 1176 1197 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 10 63 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 1122 1154 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 652 670 - -
Pvu11g0362 1878 CDD HECTc 1457 1873 IPR000569 GO:0004842
Pvu11g0362 1878 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 53 1878 IPR045322 GO:0006511|GO:0061630
Pvu11g0362 1878 SMART arm_5 293 333 IPR000225 GO:0005515
Pvu11g0362 1878 SMART arm_5 210 251 IPR000225 GO:0005515
Pvu11g0362 1878 SMART arm_5 336 374 IPR000225 GO:0005515
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 652 698 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 956 1104 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 1 133 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 1058 1092 - -
Pvu11g0362 1878 Gene3D Hect, E3 ligase catalytic domains 1397 1639 - -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 956 1000 - -
Pvu11g0362 1878 SUPERFAMILY Hect, E3 ligase catalytic domain 1450 1871 IPR035983 GO:0004842
Pvu11g0362 1878 SUPERFAMILY ARM repeat 179 652 IPR016024 -
Pvu11g0362 1878 MobiDBLite consensus disorder prediction 1120 1154 - -
Pvu11g0362 1878 Gene3D Hect, E3 ligase catalytic domain 1750 1876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0362 Pvu-Chr11 3091491 3102344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0362 K10590 - gmx:100783336 3158.24