Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0344 ATGCCAATGCCATCTCCCTCGTTCCCAACCCGCAAATCCCCCCGCAACCTCTGCATCGTCAAACCCCTTTTCTCCAAATCTTCCCTCTCCGACGCCGTTTCTTCTCTCGACCTATTGCGCCTCAAGGGCATCCGCTTACCATCTCACATTTTCGCCACCCTATTGCGCCGCTGCTCCAAAACCAGGTCTTTCCGAGAGGGCAAGTTGATTCACCTCCACTTGAAGCTCACCGGTTTCAAACGCCCCCCAGCGCTTCTAGCCAACCACTTGATCTCTATGTACTTCAGCTGCGGCGATTTCGTTCAGGCACGCCAGGTGTTCGACAAAATGGACGATAGAAATTTGTACACTTGGAACAATATGCTTTCTGGGTATGCTAAATTGGGAATGATGAAGCAGGCTAGGAGCTTCTTCTACCGAATGCCTCACAAGGATTATGTATCTTGGAATTCAATGGTGGCTGGGTATGCGCACCATGGCACATTTGACGAGGCTTTGAGATTTTATCGACAGTTTAGGAGATTGTCTGTGGGGTATAACGAGTTTAGTTTTGCCAGTGTCTTGATTGTTTCTGTAAAATTGAAGGAATTTGAACTTTGTAGGCAGATCCATGGGCAGGTTTTGGCTGTTGGGTTTTTGTCCAATGTGGTTATATCCAGCTTAATTATTGATGCTTATGCAAAGTGTGGAAAGATGGAAGATGCTAGGAGATTATTTGATTACATGGCTGTGAGGGATGTTCGTGCGTGGACAACACTAGTTTCGGCTTATGCCGCTTGCGGCGACATGGAATCAGGCGCTGAGTTGTTTAGTCAGATGCCTAAAAGCCAATCCTGTTCGTGGACATCTTTGATTAGAGGTTACTCTAGAAATGGCATGGGACATGAAGCACTTGGAGTGTTTAGAGAGATGATCAAGCATCAAGTTAGACCTGATCAATTTACGTTCAGTACTTGTCTATTAGCTTGTGCCACTATTGCTTCATTGAAGCATGGTAAACAAATACATGCGTTTTTGGTGCGAAATAGCATCAAACCTAATACTGTTGTAACTAGTGCTATTGTTGACATGTATTTGAAATGTGGAAGGTTGGAAACTGCCAGGCGAGTCTTTAATTTCACTGGAAATAAGCAGGATGTAGTGCTGTGGAACACGATTTTATCAGCACTGGCTCACTATGGCTATGGCATAGAAGCAATTATGATGCTATATAACATGCTAAAATCAGGAGTGAAGCCAAATGGGACCACTTTTGTCAGCATTTTAAATGCTTGTAGTCATTCAGGTCTTGTACAGGAAGGGCTTCAGTTATTCAAGTCCATGACTAGTGAGCATGGTGTCGTCCCTGACCAAGAACACTACGCATGCTTAACTAATCTTTTGGGTGAAGCTGGATGTTCTAATGAATCGGTGAAGGATCTGCAGATGATGGATTCTAAGCCAGGTGACCATATTGTATGTAGATTGCGTGGGAATATAGATCATGGGAGAGAAGTTGCTGTACTCCTTATCAAATTGCAGCCACAATCCTCTGCTGCCTACGAATTACTTTCAAGTATTTATGCTGCACTTGGGAAATGGGAATTGGTTGGGAAAATAAGACATATTTTGTATGCGAGACAGGGAGGAAACGAGCAGGCCATTACTTGA 1650 0.4424 MPMPSPSFPTRKSPRNLCIVKPLFSKSSLSDAVSSLDLLRLKGIRLPSHIFATLLRRCSKTRSFREGKLIHLHLKLTGFKRPPALLANHLISMYFSCGDFVQARQVFDKMDDRNLYTWNNMLSGYAKLGMMKQARSFFYRMPHKDYVSWNSMVAGYAHHGTFDEALRFYRQFRRLSVGYNEFSFASVLIVSVKLKEFELCRQIHGQVLAVGFLSNVVISSLIIDAYAKCGKMEDARRLFDYMAVRDVRAWTTLVSAYAACGDMESGAELFSQMPKSQSCSWTSLIRGYSRNGMGHEALGVFREMIKHQVRPDQFTFSTCLLACATIASLKHGKQIHAFLVRNSIKPNTVVTSAIVDMYLKCGRLETARRVFNFTGNKQDVVLWNTILSALAHYGYGIEAIMMLYNMLKSGVKPNGTTFVSILNACSHSGLVQEGLQLFKSMTSEHGVVPDQEHYACLTNLLGEAGCSNESVKDLQMMDSKPGDHIVCRLRGNIDHGREVAVLLIKLQPQSSAAYELLSSIYAALGKWELVGKIRHILYARQGGNEQAIT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0344 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Pvu11g0344 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 147 176 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 280 312 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 116 145 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 88 115 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 249 279 IPR002885 -
Pvu11g0344 549 TIGRFAM PPR: pentatricopeptide repeat domain 222 246 IPR002885 -
Pvu11g0344 549 SUPERFAMILY HCP-like 88 177 - -
Pvu11g0344 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Pvu11g0344 549 Gene3D Tetratricopeptide repeat domain 329 495 IPR011990 GO:0005515
Pvu11g0344 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 449 IPR002885 -
Pvu11g0344 549 Gene3D Tetratricopeptide repeat domain 243 328 IPR011990 GO:0005515
Pvu11g0344 549 SUPERFAMILY TPR-like 152 528 IPR011990 GO:0005515
Pvu11g0344 549 Pfam PPR repeat 88 114 IPR002885 -
Pvu11g0344 549 Pfam PPR repeat 220 245 IPR002885 -
Pvu11g0344 549 Pfam PPR repeat 116 144 IPR002885 -
Pvu11g0344 549 Pfam PPR repeat 147 175 IPR002885 -
Pvu11g0344 549 Pfam PPR repeat 249 276 IPR002885 -
Pvu11g0344 549 Gene3D Tetratricopeptide repeat domain 22 176 IPR011990 GO:0005515
Pvu11g0344 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Pvu11g0344 549 Pfam PPR repeat family 278 324 IPR002885 -
Pvu11g0344 549 Pfam PPR repeat family 379 426 IPR002885 -
Pvu11g0344 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 273 - -
Pvu11g0344 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 143 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0344 Pvu-Chr11 2909330 2911723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0344 43 541 Glycoside Hydrolase AT3G49170 26.632 3.13e-65 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0344 - - gmx:100798659 884.789