Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0334 ATGCCGAAGGCTTGTGACTTGCAAATCAACATCGATGGTCAGCAGATATTTCTTTTGAAAGAGAAGGTTATTTCAAAATACTGTGGAGGGTTGAAAAAAATCTTGAATAACAGAAAGAGAAGATGTCATGTGAAGCAGGAGTTGGGGATTAGAATCAATGATTTCCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAATGTTCTGCTACAATGATGGAAAAATCCAAATCACTGAAGCTAATGTGTGTCTCCTCTACTGTTGTGCTGTTTATCTTGGAATGACGGAGAAGGTACTCAACAACAATCTGCTGCAACAAACAGAAACTTTTCTGGAGGGAATCTTCAACTGGAAATGGGATGACATACTTGTGATTCTCAAGAGTTGCCAGCAGTTTTATACATATGCAGATGGCTATGGTCTCTTGGAGAAGATCATCAGTGTCTTAGCCAAGTTTGTCCAGAATTCAGATTCAAACCTCCTCATGTCCTCACCTTCAGCTTCATCATCATCTTCTTCGCCAGAAACCAATTCTGATAAAAGTTTATCTTTTTCATCCAAGAAAACTACCCCAGAAAAAATCAAGTCAACTTTGTCACGCAAGGCATGGTGGTTTGATGATTTGGCAACTTTTCCACCAAACATCATTGAGAAACTTATCCAGGCTATTGGAGCTTACAAAGCTGATAACAAAGATTTAATCCTCACAAGATTTCTGTTGCATTATCTGAAAATAGCCACTCAAACCGGAGCAGTTGATTGCAGAAACAACAATGAGTATGCTGCTCTTGCAGAAACAGCAACTTATGGGGTCATATCTGTTGGAAGAATGACCTTTTCTTGCAGAGGCCTTTTTTGGGTTTTAAGGATTGTGTCCAAATTTGGGTTGAGTAGAGATGTTAGAACTGAATTGGAGAAAGTGATTGGTGGGGTGATTGAGCAAGCTACACTGGATGATCTTCTAGTTTCTGGGCATGACATGGGAGTTTATTATGATATTGATTTGGTGATAAGATTGGTTAGGCTATTTGTTGATATCAATGGTGCTGATGATGGAATGTGTTTACAGAAAGTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCCCCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTAGCAGAATGCTTGCCAGATTCAGCAAGGGATTGTTATGATGGAGTCTATAAAGCCATTGACATCTATCTGCAGTCTCACCCAATTATCACATTTGAGGAAAGATCGAGACTGTGTAGATGTCTTAATTACACCAAACTCAGCTTTGAAGCAAGTAAAGATATGGCCAAGAACCCCAGAATACCTCCAAGGGTTGCAATGGAGGCTCTTATTTCTCAACAATCAAAAGTTCCAACAATCGACTATGTAGCTGAGACTCCAAGGGTTAAACCTTCCCAAATATACAAAGAAAAAACCAGAAACAGCTTCACCCAAGAGAGCAAAGACATGGAACTGAACATGGACAAGATGCAATGGGGAGTAATAGAACTGGCGAAATTACACAAGGAAATGAACGGTCATGTATCGAAGTTGTTCTTGCTTGATTCTGCTCGTACTTCATCTTCACCAAGATTTTGTTGA 1617 0.3964 MPKACDLQINIDGQQIFLLKEKVISKYCGGLKKILNNRKRRCHVKQELGIRINDFPGGPEGFELVSMFCYNDGKIQITEANVCLLYCCAVYLGMTEKVLNNNLLQQTETFLEGIFNWKWDDILVILKSCQQFYTYADGYGLLEKIISVLAKFVQNSDSNLLMSSPSASSSSSSPETNSDKSLSFSSKKTTPEKIKSTLSRKAWWFDDLATFPPNIIEKLIQAIGAYKADNKDLILTRFLLHYLKIATQTGAVDCRNNNEYAALAETATYGVISVGRMTFSCRGLFWVLRIVSKFGLSRDVRTELEKVIGGVIEQATLDDLLVSGHDMGVYYDIDLVIRLVRLFVDINGADDGMCLQKVKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYLQSHPIITFEERSRLCRCLNYTKLSFEASKDMAKNPRIPPRVAMEALISQQSKVPTIDYVAETPRVKPSQIYKEKTRNSFTQESKDMELNMDKMQWGVIELAKLHKEMNGHVSKLFLLDSARTSSSPRFC* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0334 538 Pfam NPH3 family 203 437 IPR027356 -
Pvu11g0334 538 SUPERFAMILY POZ domain 3 96 IPR011333 -
Pvu11g0334 538 MobiDBLite consensus disorder prediction 164 186 - -
Pvu11g0334 538 ProSiteProfiles NPH3 domain profile. 202 461 IPR027356 -
Pvu11g0334 538 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 516 - -
Pvu11g0334 538 PANTHER OS12G0117600 PROTEIN 2 516 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0334 Pvu-Chr11 2811533 2814855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0334 4 464 EF-hand Containing Proteins AT3G44820 26.892 2.21e-47 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0334 - - gmx:100808259 861.677