Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0330 ATGGCAACCCTTCCTGGAAAACAAGCTCCTTCGAATGGGTCTGTCTATGTGTGCAACTTACCCTACGGGACTGACGAAAATATGTTGGCTGAATATTTTGGCACCATTGGATTAGTGAAGAAAGATAAACGTACAGGGAGACCAAAAATATGGTTATATCGAGACAAAGAGACTAATGAGCCAAAGGGAGATGCTACTGTAACATATGAAGATCCGCATGCTGCTTTAGCGGCTGTTGAATGGTTTAACAACAAAGATTTTCATGGCAGTTTAATTGGAGTTTTTATAGCAGAATCAAAAAACAAGGATGACCAAACTTATAATTCAGCAGCAGTAGAACCGGTAGATGCTGGTAATGTTGATGGATTAGAGGAGGCTACCAAGGATGTTAATGGTGGTAGTGGAAGAGGTAGAGGCCAAATTGATCCTTCAGGCAAAGCATGGCAACAAGATGGCGATTGGTTGTGTCCAAATACAAGTTGCTCCAATGTGAACTTTGCCTTTCGTGGTGCATGTAATCGCTGTGGAACTGCTCGTCCTGCTGGTGCTGCTGGAATATCAGGGGCTGGTGGCCGTGGCAAGGGACGTGCTGCTGGACAAGAATCAGGGGGTGCTGGCCGGCCAGCTGCTGGTGGGGGACTATTTGGTCCCAATGATTGGCCTTGTCCAATGTGTGGCAATATCAATTGGGCGAAGCGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTTAGAGGAGGACGAGGTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATAGAAGAAACCAGACGTCGTAGGAGGGAAGCTGAAGATGATGGGGAGTTGTATGATGAATTTGGAAACCTAAAGAAAAAATTCCGTGCCAAAACACAGCAAGCTGAAGCTGCACGTGGAATTCCTGGTTCTGGACGTGCTGGTTGGGAGGTTGAAGAACTAGGGATAGACCGGGATGGTAGAGAAAGTAGAGACAGAGGAAGGGAGCGTAATGATGGTGAGAGCAGGAACAGAGAGCGAAGTGACAAAGAGAGGCAAAGCAGTTGGAATAGAGACAGGGACAGGGGAAGAGATAGAGATCGAGACTGGGACTATGTTGATCGAGATAGAGATTATGGGCGTGATCGGGATCGTAGTAGACATCGATATTAA 1170 0.4624 MATLPGKQAPSNGSVYVCNLPYGTDENMLAEYFGTIGLVKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSLIGVFIAESKNKDDQTYNSAAVEPVDAGNVDGLEEATKDVNGGSGRGRGQIDPSGKAWQQDGDWLCPNTSCSNVNFAFRGACNRCGTARPAGAAGISGAGGRGKGRAAGQESGGAGRPAAGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEEIEETRRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARGIPGSGRAGWEVEELGIDRDGRESRDRGRERNDGESRNRERSDKERQSSWNRDRDRGRDRDRDWDYVDRDRDYGRDRDRSRHRY* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0330 389 ProSiteProfiles Zinc finger RanBP2 type profile. 150 181 IPR001876 -
Pvu11g0330 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 91 IPR000504 GO:0003723
Pvu11g0330 389 Pfam Zn-finger in Ran binding protein and others 151 180 IPR001876 -
Pvu11g0330 389 Pfam Zn-finger in Ran binding protein and others 219 245 IPR001876 -
Pvu11g0330 389 ProSiteProfiles Zinc finger RanBP2 type profile. 216 245 IPR001876 -
Pvu11g0330 389 CDD RRM_SARFH 15 97 - -
Pvu11g0330 389 MobiDBLite consensus disorder prediction 183 212 - -
Pvu11g0330 389 Gene3D - 148 183 - -
Pvu11g0330 389 Gene3D - 215 246 - -
Pvu11g0330 389 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Pvu11g0330 389 SMART rrm1_1 14 95 IPR000504 GO:0003723
Pvu11g0330 389 MobiDBLite consensus disorder prediction 257 280 - -
Pvu11g0330 389 MobiDBLite consensus disorder prediction 317 389 - -
Pvu11g0330 389 Coils Coil 260 280 - -
Pvu11g0330 389 SUPERFAMILY Ran binding protein zinc finger-like 145 182 IPR036443 -
Pvu11g0330 389 ProSitePatterns Zinc finger RanBP2-type signature. 154 175 IPR001876 -
Pvu11g0330 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Pvu11g0330 389 MobiDBLite consensus disorder prediction 247 280 - -
Pvu11g0330 389 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 389 - -
Pvu11g0330 389 MobiDBLite consensus disorder prediction 125 148 - -
Pvu11g0330 389 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 389 - -
Pvu11g0330 389 SMART zf_4 152 178 IPR001876 -
Pvu11g0330 389 SMART zf_4 218 242 IPR001876 -
Pvu11g0330 389 ProSitePatterns Zinc finger RanBP2-type signature. 220 239 IPR001876 -
Pvu11g0330 389 MobiDBLite consensus disorder prediction 295 389 - -
Pvu11g0330 389 SUPERFAMILY Ran binding protein zinc finger-like 211 246 IPR036443 -
Pvu11g0330 389 Gene3D - 12 95 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0330 - - gmx:100780819 577.785