Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g0324 | ATGGCTTCGCCGGCGTGGTTGTCGCACGAGGCGCCGCCACCTGTGTCCGGAGAAATGTCTCTTCCTGTGGCTTCTCCCACACCTAATTCCTCAAATGCAACTCCTTCTACCGCTCCGGCACCGGCACCGGTACCTCCATTTCCTTACGGCGTTCTTCAGAATGCCAATGCTTCGGGAAGCTCTCAGCAGTCTTCGGCACATAATGTGATAAAATCCAATTCGATAGTGAATCCTGTAGTTTTTCAACCTCCAGTTCCTGGTGTCTCGTCGCATGCTGCTCTTTCATTTTCATATAATATTCCCCCGAGTGGTGCCGCTTTTCCTAGCAACCAGCAGAATACTCAATCTAGTAGTGAAATATCGGATTCTGTTGCACAGGATGTTACTAAATTGTCATCTGCGTCAAGTACCCCACATTCTGTCCCTGCTCATACTTCTACACCCATAATGCCTCCCTCTGATCCTAATTATCGTCCAACTACTTCATGGATGCCCACTGCCATGTCTCTTCCTGTGCATCCTGTAATGCCTACTCCAGGAAATCCTGGCCCTCCTGGATTAGCATCATCTTCTATGATATCTATCAATCCTGCTGTTCCATCTACAGGAACAGATTCTTCCTCAGCAGCATTACTGAGACCAAACATGCCAATTTCAGCCATTGCATCAGATCCTACTAACCCTCTGAAAGGTTTACCCTATCCATCCATGCCTTCTATGGCTGCTCCCCCTCAGGGACTTTGGTTACAGACCCCACAGATGAGTGGTGTATTTAGGCCCCCATATCTTCAATACCCCGCTCCTTTTCCTGGCCCTTTTCCATTTCCAGCACGTGGTGTTACTCTCCCTGCTGTTCCAATTCCTGATTCTCAACCTCGTGGTGTTACACCTGTGAGTGGTGGCAGTAGCACTTTTTCACCTGCTTCCAGCAATCAGCTGAGGGGAACAACTGCTTTGCAAACAGAAGTTATTTCAGGGCCAGCTGATGATAAGAAGAAATTAAATGCTGTCATCGCCCCAAATGAGGATACTTCTAATAATGATCAATTAGAGGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCCATGACTGGAGAATCAACATATGATAAACCTGCTGGATTTATAGGGGAGTCTCACCAAGTTTCCGCTCAGCCTACTCCAGTTTCAATGACGGATTTGCCTGGTACCGATTGGCTGTTGGTCTCTACAAGTGATGGAAAAAAATATTACTACAACAATCGAACCAAGACTAGCTGCTGGCAAATTCCAAATGAGGTGGCTGAATTGAAAAAGAAACAAGATGGTGATGTTACAAAAGATCAGTTAATGTCAGTTCCAAATAATAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAATCTACAGAACTCATCGTCGGCTTTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTACTTCCTCCTCTATTCCTGCACCATCAGTACAAACAGGATCTGAATCAAATGGTTCAAAAGCAGTTGAATCTACCTCTAAGGGAATGCAAGCAGATAATAGCAAAGATAAACAAAAAGATAGTAATGGTGCTGCTAATGTTTCCGATACATCTTCAGATTCTGAAGATGAAGATAGTGGGCCTTCAAAGGAGGAGTGCATCATTCAATTCAAGGAGATGCTCAAGGAGCGAGGAGTGGCACCATTCTCTAAGTGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCTCGTTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTCGAGCATTATGTTAAAACTCGTGCTGAAGAAGAACGCAAAGAAAAGCGGGCTGCACAGAAGGCTGCAATTGAAGGATTTAAGCAATTACTGGATGAAGCCTCAGAGGATATTAATTACAATACTGATTATCAAAGTTTCCGGAAGAAATGGGCAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAGCAAGAGCACCTATTGAATGATAGAGTATTTCCTTTGAAGAAAGCTGCTGAAGAAAAGACTCAAGCAATGCGTGCAGCTGCTGCAGCCAGTTTTAAGTCAATGCTTAAAGATCGTGGGGATATATCTTTCAACTCACGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGAGTATTTATCTGAACTGAAAGCTGCAGAATACGCCGCAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGAGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAGAGGGTGCGACTAAAAATTCGAAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTGGTGGAGATAATCAAAGATCCTCTGGCATCATGGACGGAATCCAAGCCTAAATTAGAAAAGGATCCTCAAGGACGCGCAACTAATCCTGAACTTGATTCTTCTGATACGGAAAAGTTGTTTCGGGAACACGTGAAGATGCTTCAGGAGCGATGTGCTCACGAGTTTAGAGTTCTGATAGCTGATGTATTGACTTCCGATGCTGCATCTCATGAAAATGACGATGGAAAAACAGTGCTTAATTCTTGGTCTACAGCGAAGCGAGTTCTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGGCGGTATGCAGAGGACATGCTGCGGCGCCAAAAGGCATCTCATTCACACGATTCCAGGGAAGACAAACATAGTGACGGTAGAGGTAGAAATCCTCTAGAATCTTCCAAATATCCATTGCAATCTGGGAGATCGCACGACCGAAGATAA | 2934 | 0.4431 | MASPAWLSHEAPPPVSGEMSLPVASPTPNSSNATPSTAPAPAPVPPFPYGVLQNANASGSSQQSSAHNVIKSNSIVNPVVFQPPVPGVSSHAALSFSYNIPPSGAAFPSNQQNTQSSSEISDSVAQDVTKLSSASSTPHSVPAHTSTPIMPPSDPNYRPTTSWMPTAMSLPVHPVMPTPGNPGPPGLASSSMISINPAVPSTGTDSSSAALLRPNMPISAIASDPTNPLKGLPYPSMPSMAAPPQGLWLQTPQMSGVFRPPYLQYPAPFPGPFPFPARGVTLPAVPIPDSQPRGVTPVSGGSSTFSPASSNQLRGTTALQTEVISGPADDKKKLNAVIAPNEDTSNNDQLEAWTAHKTEAGIIYYYNAMTGESTYDKPAGFIGESHQVSAQPTPVSMTDLPGTDWLLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDQLMSVPNNNVLSDRGSGMVTLNAPAINTGGRDAAALKPSNLQNSSSALDLIKKKLQDSGTPVTSSSIPAPSVQTGSESNGSKAVESTSKGMQADNSKDKQKDSNGAANVSDTSSDSEDEDSGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKQLLDEASEDINYNTDYQSFRKKWANDPRFEALDRKEQEHLLNDRVFPLKKAAEEKTQAMRAAAAASFKSMLKDRGDISFNSRWSRVKESLRDDPRYKSVRHEDREVLFNEYLSELKAAEYAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVEIIKDPLASWTESKPKLEKDPQGRATNPELDSSDTEKLFREHVKMLQERCAHEFRVLIADVLTSDAASHENDDGKTVLNSWSTAKRVLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHSHDSREDKHSDGRGRNPLESSKYPLQSGRSHDRR* | 978 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0324 | 977 | CDD | WW | 353 | 378 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | ProSitePatterns | WW/rsp5/WWP domain signature. | 353 | 378 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | ProSiteProfiles | FF domain profile. | 572 | 626 | IPR002713 | - | |
| Pvu11g0324 | 977 | Coils | Coil | 769 | 814 | - | - | |
| Pvu11g0324 | 977 | SUPERFAMILY | FF domain | 701 | 765 | IPR036517 | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 295 | 314 | - | - | |
| Pvu11g0324 | 977 | Gene3D | - | 390 | 448 | - | - | |
| Pvu11g0324 | 977 | Gene3D | - | 336 | 389 | - | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 505 | 575 | - | - | |
| Pvu11g0324 | 977 | SUPERFAMILY | WW domain | 352 | 382 | IPR036020 | GO:0005515 | |
| Pvu11g0324 | 977 | SUPERFAMILY | WW domain | 404 | 436 | IPR036020 | GO:0005515 | |
| Pvu11g0324 | 977 | ProSitePatterns | WW/rsp5/WWP domain signature. | 405 | 430 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | SUPERFAMILY | FF domain | 567 | 632 | IPR036517 | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 936 | 977 | - | - | |
| Pvu11g0324 | 977 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 353 | 380 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | SMART | ww_5 | 348 | 380 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | SMART | ww_5 | 400 | 432 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | CDD | WW | 403 | 432 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | Gene3D | FF domain | 635 | 694 | IPR036517 | - | |
| Pvu11g0324 | 977 | Gene3D | FF domain | 695 | 774 | IPR036517 | - | |
| Pvu11g0324 | 977 | Gene3D | FF domain | 558 | 634 | IPR036517 | - | |
| Pvu11g0324 | 977 | SMART | FF_2 | 810 | 867 | IPR002713 | - | |
| Pvu11g0324 | 977 | SMART | FF_2 | 572 | 626 | IPR002713 | - | |
| Pvu11g0324 | 977 | SMART | FF_2 | 707 | 761 | IPR002713 | - | |
| Pvu11g0324 | 977 | SMART | FF_2 | 639 | 689 | IPR002713 | - | |
| Pvu11g0324 | 977 | SUPERFAMILY | FF domain | 631 | 700 | IPR036517 | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 769 | 797 | - | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 936 | 959 | - | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 22 | 37 | - | - | |
| Pvu11g0324 | 977 | ProSiteProfiles | FF domain profile. | 639 | 694 | IPR002713 | - | |
| Pvu11g0324 | 977 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR 1 | 109 | 971 | IPR045148 | GO:0003712|GO:0070063 | |
| Pvu11g0324 | 977 | ProSiteProfiles | FF domain profile. | 810 | 867 | IPR002713 | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 293 | 314 | - | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 505 | 538 | - | - | |
| Pvu11g0324 | 977 | PANTHER | TRANSCRIPTION ELONGATION REGULATOR HOMOLOG | 109 | 971 | - | - | |
| Pvu11g0324 | 977 | SUPERFAMILY | FF domain | 870 | 940 | IPR036517 | - | |
| Pvu11g0324 | 977 | Pfam | FF domain | 578 | 623 | IPR002713 | - | |
| Pvu11g0324 | 977 | Pfam | FF domain | 642 | 690 | IPR002713 | - | |
| Pvu11g0324 | 977 | Pfam | FF domain | 710 | 758 | IPR002713 | - | |
| Pvu11g0324 | 977 | Gene3D | FF domain | 868 | 934 | IPR036517 | - | |
| Pvu11g0324 | 977 | Gene3D | FF domain | 807 | 867 | IPR036517 | - | |
| Pvu11g0324 | 977 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 405 | 432 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | SUPERFAMILY | FF domain | 803 | 872 | IPR036517 | - | |
| Pvu11g0324 | 977 | Pfam | WW domain | 351 | 378 | IPR001202 | GO:0005515 | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 835 | 857 | - | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 106 | 147 | - | - | |
| Pvu11g0324 | 977 | ProSiteProfiles | FF domain profile. | 707 | 761 | IPR002713 | - | |
| Pvu11g0324 | 977 | MobiDBLite | consensus disorder prediction | 106 | 162 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g0324 | K12824 | - | gmx:100815386 | 1514.59 |