Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0292 ATGGAGATAAATTTGGGAAAACTTGCATTTGATATTGATTTTCATCCGTCAGATAATCTTGTGGCCACGGGTCTAATTGACGGTGACGTCCACTTATATCGTTACAGCCCTGACAGTGTCCCTGTGAGGCAATTGGAAGTTCATGCACACACCGAGTCTTGCAGGGCTGTTCGATTCATCAATGGTGGACGTGTGCTATTAACGGGTTCTCCAGATTGCTCTATACTGGCTACGGATGTGGAGACTGGATCTACAATTACCCGTATTGATAATGCTCATGAGGCTGCAGTAAATAGATTGATAAACTTGACCGAGTCAACTGTTGCCTCTGGAGATGATGAGGGTTGTATAAAGGTTTGGGATACCAGAGAACGCTCTTGTTGCAATTCTTTTAATGCCCATGAAGATTACATTTCGGACATGACTTTTGCATCTGATGCTAGGAAACTTTTGACAACAAGTGGAGACGGGACTCTTTCTGTTTGCAATCTTCGAAGAAATACAGTGCAAACTCGATCTGAATTCTCTGAAGATGAGTTGCTGTCTGTTGTTTTAATGAAGAATGGTAGGAAAGTTGTGTGCGGCTCACAAACTGGAATCATTCTGTTGTATTCATGGGGATGCTTCAAGGATTGTAGTGATCGATTTATTGATCTCTCTTCCAACTCTATTGATGCAATGTTGAAGGTTGATGAAGATAGAATTATTACTGGATCAGAGAATGGAATGATCAACTTGGTCGGGATATTACCCAACAGAGTCATCCAGCCAATAGCTGAACACTCAGATTGTCCTATTGAGTGTCTTGCATTCTCTCATGATAGGAAGTTCCTCGGAAGCATCGCACATGATCAAATGTTAAAGCTATGGGATTTGGATAGTATACTACAAGATACCGTAAACACACAAACAAATGAAACTGGAGTTGTTGATAGTGATAGTGATGGTGATGAAATGGAACTAGATAAGGATTCTTCAAAGTTGAGTAAAGGAAACTTTGTTACAGGGAACAAGAGAAAGAATGCAAATAATGAGCAAGCTGGTTCGAACAACTTCTTTGCCGATATATAG 1071 0.4062 MEINLGKLAFDIDFHPSDNLVATGLIDGDVHLYRYSPDSVPVRQLEVHAHTESCRAVRFINGGRVLLTGSPDCSILATDVETGSTITRIDNAHEAAVNRLINLTESTVASGDDEGCIKVWDTRERSCCNSFNAHEDYISDMTFASDARKLLTTSGDGTLSVCNLRRNTVQTRSEFSEDELLSVVLMKNGRKVVCGSQTGIILLYSWGCFKDCSDRFIDLSSNSIDAMLKVDEDRIITGSENGMINLVGILPNRVIQPIAEHSDCPIECLAFSHDRKFLGSIAHDQMLKLWDLDSILQDTVNTQTNETGVVDSDSDGDEMELDKDSSKLSKGNFVTGNKRKNANNEQAGSNNFFADI* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0292 356 Gene3D - 230 351 IPR015943 GO:0005515
Pvu11g0292 356 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Pvu11g0292 356 SMART WD40_4 1 34 IPR001680 GO:0005515
Pvu11g0292 356 SMART WD40_4 82 121 IPR001680 GO:0005515
Pvu11g0292 356 SMART WD40_4 251 291 IPR001680 GO:0005515
Pvu11g0292 356 SMART WD40_4 168 205 IPR001680 GO:0005515
Pvu11g0292 356 SMART WD40_4 124 163 IPR001680 GO:0005515
Pvu11g0292 356 SMART WD40_4 38 79 IPR001680 GO:0005515
Pvu11g0292 356 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 347 - -
Pvu11g0292 356 MobiDBLite consensus disorder prediction 306 356 - -
Pvu11g0292 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 172 IPR001680 GO:0005515
Pvu11g0292 356 PANTHER WD REPEAT-CONTAINING PROTEIN 55 8 347 - -
Pvu11g0292 356 PIRSF WD_rpt_55 1 356 IPR017422 -
Pvu11g0292 356 SUPERFAMILY WD40 repeat-like 10 294 IPR036322 GO:0005515
Pvu11g0292 356 MobiDBLite consensus disorder prediction 328 356 - -
Pvu11g0292 356 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 294 IPR001680 GO:0005515
Pvu11g0292 356 Pfam WD domain, G-beta repeat 260 291 IPR001680 GO:0005515
Pvu11g0292 356 Gene3D - 9 229 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0292 Pvu-Chr11 2305788 2311130 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0292 K24750 - gmx:100792826 611.298