Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g0279 | ATGAAGCTCCGAGTTGTTCGCGCGGCGCTCCCCGCCGCAGCCACCACCACCCCTTTTCTCCACAGACTCTTCTCCGCGTCCAAATTAGACGACGAAAACGATGGTCATTTTGTGTCACTCCTTTGCGACATCGTTCGAGGAAAACAGAGTTGGAAGGTGGCTTTGAGCGACGCTTCAATTTCATCGGCATTGAGGCCCCATCACGTGGAACAAGTTTTGATCAACACCTTGGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTTCTGGGTCTGCACAAAAACATGAACCACTCCACAGCCTCCTTCGCCATCTTGGTCCACGCGCTTGTTCAGTGCAGACTATTTTGGCCTGCTAATTCCCTCTTGCACACCCTTCTCCTTCGTGGGTCCCCCCCAAACTACGTTTTTTCACACTTTCTACACTCTTACAAGCATTGTAAGTTTGCGTCCACTTTGGGTTTCGATTTGCTGGTTCAGAGTTACGTGCTGAGTTCACGAGTTTCTGATGCTGTTGTCGTGGTGCAACTCATGTTTGCCAATGCTTTGTTGCCTGAGGTTAGAACATTGAGCTCCCTCTTGAACGGGCTTTTGAGAGTTAGAAAATTTATAACGGTTTGCGAATTGTTTGATCAGTCTGTGAATGCGGGTGTTCGACCTGATCCTTATACTTGCTCCGCTGTGGTTCGGAGTCTCTGCGAATTGAAAGATTTTTGTAGGGCTAAGGAGAAGATTCTCTGGATGGAATCTAATAGGTTTGCTTTGAGTGTTGTAACTTACAATGTCTTGATTCATGGGCTTTGCAAGGGTGATAGAGTTTGGGAAGCTGTTGAGGTTAAAAGATCGTTGAGGGTAAAGGGTTTAGAAGGTGATGTTGTTACATACTGTACATTAGTGCTTGGTTTTTGTAGGGTGCAGCAATTTGAGGCTGGAATTCAGCTTATGGATGATATGGTTGAATTGGGGCTTGCTCCATCCGAAGCTGCTGTGTCGGGGTTAGTAGATGGATTGAGAAAGCAGGGAAAGATTGATGATGCTTATGAGTTGGTAGTTAAGGTAGGGAGGTCTGGTTTTGTGCCGAATTTGTTTGTTTATAACGCATTGATCAATTCTTTGTGCAAAGGTGGAGATTTTGATAAGGCAGAGTTGCTTTATAATAATATGAGTTTGATGAACTTGCATCCCAATGGTATTACTTATTCCATTCTTATTGATTCCTTCTGCAGAAGGGGAAGGTTGGATGTTGCAAGATCTTATTTTGATAGAATGATAGAAGATGGTATAAGAGAAACTCTATATGCCTACAACTCTTTGATAAATGGCCAATGCAAGTTCGGGGATTTGAGTGTAGCCGAGTCTCTGTTTACTGAGATGATCAATAAAGGGGTGGAGCCAACTGCTACAACTTTTACGTCATTGATTAGTGCTTATTGCAAAAACCTACAACTACTAAAATCATTTGAGCTATATAATGAGATGATTGAGAAAGGAGTTACTCCAAACATTTATACTTTCACAGCACTTATTTCTGGGCTTTGCAGCACTAATAATATGGCAGAAGCATCCAAACTTTTTGATGATTTGCTTGAAAGGAAAATCAAGCCAACTGAGGTAACATATAATGTGTTGATTGAAGGGTATTGTAGGGATAACAACATTGATAAAGCCTTTGAATTGCTTGAAGACATGCTTCAAAAGGGCCTTGTCCCTGACACATATACCTATAGACCTCTTATCAGTGGCCTTTGCTCTAATGGTAGGGTTTCTGAAGCTGGAGATTTTATTGATGCTCTTCACAAGCAGAAAGTAAAGTTAAATGAGATGTGCTATAGTGCACTTCTACATGGCTATTGCCAGGAAGGAAGATTGGTGGAAGCACTGAGTGCTTCTTGTGAAATGATTCAAAGAGGAATCAACATGGATCTGGTTTGCCATGCTGTTCTTATCGACGGTGCTCTAAAGCAGCCAGACAGGAAAACATTTTTTGATGTCTTAAAAAATATGCATGATCAAGGATTGAGACCTGATAATGTAATATATACAAGTATGATAGATGCATACTCCAAAGAAGGATCTCTGAAGAAAGCTTTTGAATGCTGGGATTTGATGGTTACTGAGGAATGCTTTCCTAATGTCGTGACTTATACTGCTTTGATGAATGGTTTATGCAAAGCAGGAGAAATCGACAGAGCAGGTCTTCTTTTTAAAAAGATGCAGGCTGCAAATGTCCCTCCCAATTCAATCACGTATGGCTGTTTTCTTGACAATCTTACGAAGGAGGGGTATATGAAGGAAGCTACAGGGCTTCACCATGCAATGCTTAAAGGGCTTTTAGCAAACACTGTAACATACAACATTATTATCCGAGGCTTCTGCAGACTGGGTAGATTTCATGAAGCCACTGAAGTTCTTTCTGAAATGACTGAAAATGGTATTTTCCCTGACTGTGTTACCTATTCAACATTAATTTATGAGTATTGCAGAAGTGGCAATGTAGGGGCAGCTGTTAAATTATGGGATACCATGTTAAAGAAAGGTCTAAAACCAGATTTGGTTGCATACAACTTGCTAATATATGGCTGTTGCGTTAATGGAGAGCTCGACAAGGCATTTGAATTGCGTGATGATATGTTGAGGAGAGGGATGACGCCAAGACAAAATTTACGAGAATTGCAGAAGGGTGAAGATAAGAGCACTAGTTAA | 2703 | 0.4151 | MKLRVVRAALPAAATTTPFLHRLFSASKLDDENDGHFVSLLCDIVRGKQSWKVALSDASISSALRPHHVEQVLINTLDDSKLALRFFNFLGLHKNMNHSTASFAILVHALVQCRLFWPANSLLHTLLLRGSPPNYVFSHFLHSYKHCKFASTLGFDLLVQSYVLSSRVSDAVVVVQLMFANALLPEVRTLSSLLNGLLRVRKFITVCELFDQSVNAGVRPDPYTCSAVVRSLCELKDFCRAKEKILWMESNRFALSVVTYNVLIHGLCKGDRVWEAVEVKRSLRVKGLEGDVVTYCTLVLGFCRVQQFEAGIQLMDDMVELGLAPSEAAVSGLVDGLRKQGKIDDAYELVVKVGRSGFVPNLFVYNALINSLCKGGDFDKAELLYNNMSLMNLHPNGITYSILIDSFCRRGRLDVARSYFDRMIEDGIRETLYAYNSLINGQCKFGDLSVAESLFTEMINKGVEPTATTFTSLISAYCKNLQLLKSFELYNEMIEKGVTPNIYTFTALISGLCSTNNMAEASKLFDDLLERKIKPTEVTYNVLIEGYCRDNNIDKAFELLEDMLQKGLVPDTYTYRPLISGLCSNGRVSEAGDFIDALHKQKVKLNEMCYSALLHGYCQEGRLVEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDVLKNMHDQGLRPDNVIYTSMIDAYSKEGSLKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEIDRAGLLFKKMQAANVPPNSITYGCFLDNLTKEGYMKEATGLHHAMLKGLLANTVTYNIIIRGFCRLGRFHEATEVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGAAVKLWDTMLKKGLKPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGMTPRQNLRELQKGEDKSTS* | 901 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 469 | 502 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 713 | 746 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 678 | 712 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 364 | 396 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 609 | 641 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 258 | 291 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 852 | 884 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 538 | 572 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 293 | 326 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 573 | 607 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 433 | 466 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 503 | 537 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 817 | 850 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 782 | 816 | IPR002885 | - | |
| Pvu11g0279 | 900 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 428 | IPR002885 | - | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 354 | 458 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 763 | 898 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 536 | 570 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat | 845 | 877 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 571 | 605 | IPR002885 | - | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 530 | 601 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 459 | 529 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 58 | 240 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 396 | 430 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 850 | 884 | IPR002885 | - | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 241 | 353 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 326 | 360 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 815 | 849 | IPR002885 | - | |
| Pvu11g0279 | 900 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 30 | 350 | - | - | |
| Pvu11g0279 | 900 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 333 | 880 | - | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat family | 256 | 304 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat family | 535 | 584 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat family | 780 | 828 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat family | 675 | 724 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat family | 360 | 409 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat family | 469 | 514 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 780 | 814 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 676 | 710 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 466 | 500 | IPR002885 | - | |
| Pvu11g0279 | 900 | Gene3D | Tetratricopeptide repeat domain | 652 | 762 | IPR011990 | GO:0005515 | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 606 | 640 | IPR002885 | - | |
| Pvu11g0279 | 900 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 30 | 350 | - | - | |
| Pvu11g0279 | 900 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 333 | 880 | - | - | |
| Pvu11g0279 | 900 | SUPERFAMILY | HCP-like | 365 | 570 | - | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 711 | 745 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat | 434 | 463 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat | 609 | 638 | IPR002885 | - | |
| Pvu11g0279 | 900 | Pfam | PPR repeat | 748 | 775 | IPR002885 | - | |
| Pvu11g0279 | 900 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 501 | 535 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0279 | 403 | 898 | Glycosyltransferase | AT1G05670 | 30.297 | 2.60e-69 | 243 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g0279 | - | - | gmx:100797093 | 1568.52 |