Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0215 ATGGGTCAAGCTTTTCGGAAGCTCTTCGATACCTTCTTCGCCAATACCGAGATGCGGGTTGTGATGCTTGGTCTTGATGCTGCTGGGAAAACTACCATACTGTACAAGCTCCACATTGGAGAAGTTTTGTCTACTGTTCCTACAATTGGTTTTAATGTGGAGAAGGTTCAGTATAAGAATGTTGTTTTCACAGTTTGGGATGTTGGAGGGCAAGAGAAATTAAGGACACTTTGGAGGCACTATTTCAACAACACTGATGGTTTGATATATGTTATTGATAGTCTGGACCGTGAAAGGATAGGGAAAGCTAAGCAGGAATTTCAGACAATCATAAATGATCCGTTTATGCTTCACAGTATAATATTGGTGTTTGCTAACAAACAGGACCTGAGAGGAGCAATGTCACCAAGGGAAGTATGTGAAGGATTAGGTCTCTTGGATCTGAAGAATAGAAAGTGGCACATACAAGGCACTTGCGCCCTTCGGGGAGATGGCCTTTATGAGGGCTTGGATTGGCTGTCCACAACTCTGAAGGAGAGAAGAGCTGCCGGATATTCTTCAATAGGACTAGGAACTTCATCCTTCTAA 588 0.4303 MGQAFRKLFDTFFANTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRTLWRHYFNNTDGLIYVIDSLDRERIGKAKQEFQTIINDPFMLHSIILVFANKQDLRGAMSPREVCEGLGLLDLKNRKWHIQGTCALRGDGLYEGLDWLSTTLKERRAAGYSSIGLGTSSF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0215 195 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 181 IPR027417 -
Pvu11g0215 195 SMART sar_sub_1 3 177 IPR006689 GO:0003924|GO:0005525
Pvu11g0215 195 Gene3D - 3 186 IPR027417 -
Pvu11g0215 195 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Pvu11g0215 195 PANTHER ADP-RIBOSYLATION FACTOR B1C 1 189 - -
Pvu11g0215 195 SMART arf_sub_2 1 181 - -
Pvu11g0215 195 TIGRFAM small_GTP: small GTP-binding protein domain 16 138 IPR005225 GO:0005525
Pvu11g0215 195 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Pvu11g0215 195 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Pvu11g0215 195 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Pvu11g0215 195 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Pvu11g0215 195 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Pvu11g0215 195 Pfam ADP-ribosylation factor family 7 176 IPR006689 GO:0003924|GO:0005525
Pvu11g0215 195 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 189 IPR024156 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0215 Pvu-Chr11 1651913 1655376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0215 K07937 - gmx:100499903 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0215 11 1651913 1655376 Pvu11g0215 11 1651913 1655376 ECH