LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu11g0213	ATGGCTCAAAACGGAAAACCGCCGAAGCTTCCCGTCGAAGGAAAACGCAACATCCTAATCACCAGTGCCCTGCCTTATGTCAACAACGTTCCTCACCTCGGAAACATCATCGGATGCGTTCTGAGTGCCGATGTGTTCGCTCGCTACTGTCGGATTCGCGGTTACAACACTATCTACATCTGCGGTACTGATGAATATGGAACCGCGACAGAGACTAAAGCCATGGAAGAAAAATGCTCTCCCAAGGAGATTTGTGACAAATACTATGCTATACATAAGGAGGTGTATAATTGGTTCAACATAAGTTTTGACGAATTTGGGAGGACATCATGTCCTCAGCAAACTGAAGTTTGTCAAGAAATTTTTAAAAAAATATTTGACAACAAGTGGCTCTCCGAAAACACAATGCAGCAGCTTTACTGTGACACGTGTGAAAAGTTCTTAGCTGATAGGCTTGTGGAGGGAACCTGCCCGACTCCTGGGTGTGAGTATGATTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAAACTTCTGAATCCAACAGAATTGAAAAATCCCAGATGCAAGGTTTGTAAGAAAACGCCTCGTATTCGGGATACAGACCATTTGTTTCTGGAACTCCCTTTATTGAAGGACAGATTGGAAAAATACATCACTGAGATGTCTGTGGTTGGTGGATGGAGTCAGAATGCCATCCAAACGACAAATTCATGGCTTAGAGAAGGACTAAAGCCTCGTTGTATTACGAGGGATCTAAAGTGGGGGGTTCCCGTTCCACATGAAAAATACAAAGACAAGGTTTTCTATGTGTGGTTTGATGCACCAATTGGATATGTGTCAATCACTTCGTGTTACACACATGAATGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGCTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTCTTCTTGGAACTGGTGAGAATTGGACTTTAATGAAGACTATCAGTGTTACTGAATACTTAAATTATGAATCAGGGAAGTTTTCCAAGAGCAAAGGTATTGGAGTATTTGGTAATGATGTGAAAGATACAGAGATTCCGGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCCGAGGTATCAGATACATTATTTACATGGCCTGATTTGCAAGCTAAATTAAATAGTGAATTACTGAATAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGAAGGTCAAGGATATGATTCCATTATCCCCTCCATTCCTGATGATGTAAGTGCTGACTCCCATAATCTGACCAAAAAATTAGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGATTGAAAACTGCAATGAGCATATCTAGCGAGGGAAATGCATATCTCCAGGAAGCTCAATTCTGGCGCCTTTATAAGGAAAACAAATCTCTCTGCGCCCTTGTCATGAAAACTGCAGTTGGGGTTGTATACCTTCTGGCATGTTTACTAGAACCTTTTATCCCATCTTTCACCCTCGAAGTATTTAAGCAACTAAATTTGCCTGCGGAGATACATGTCTCACTTTGTGACGATAAAGGAGATGTTGATAGGGTAAAAAGACTTTGGGATATCGTAAGTTCTGGTCATAAACTTGGAACACCCAAGCCATTGTTCAAGGAGCTGAAAGATGAAGAAGTGGACTTCTACAGGAAGAAGTTTGCCGGAAGTCAGGCTGATAGGATTGTGCGAGCCGAGGTTGAAGCTGACAAGGTTGCTGAGCAACTGAAGAAAACAAAAGTTTCAGATGGCAATGGAAAGAAAAAACCAGCAAAATCATCAAATGAAGCAAAAAACAAAGCAGCCCCTGAACCAGATATTACCATCACTAGGCTTGATATCCGGGTTGGCTTGATAACAAAAGCTCAAAAACATCCTGATGCAGATGCACTATATGTTGAAGAGATCGATGTTGGTGAAGAACAGACTAGAACTGTTGTCAGTGGGCTTGTCAAATACATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGTAACCTAAAGCCAGCATCCATGAGAGGCATTAAATCCCAAGCAATGGTTCTTGCTGCTTCAAATGATGATCATTCCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTACTGTTGGAGAAAGAATTACATTCCCAGGAAATGAAGGTAATCCTGATGAACTCTTGAACCCAAAGAAGAAAGTTTGGGAGACTTTGCAAGTTGATCTTCATACTAACGAGGATCTGGTAGCATGCTACAAAGATGTTCCACTCACCACCTCAGCTGGTGTTTGCAAGGTTTCATCCATTAGCTGTGGAACCATAAAGTAG	2412	0.4171	MAQNGKPPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRIRGYNTIYICGTDEYGTATETKAMEEKCSPKEICDKYYAIHKEVYNWFNISFDEFGRTSCPQQTEVCQEIFKKIFDNKWLSENTMQQLYCDTCEKFLADRLVEGTCPTPGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCKKTPRIRDTDHLFLELPLLKDRLEKYITEMSVVGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTHEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYESGKFSKSKGIGVFGNDVKDTEIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPEGQGYDSIIPSIPDDVSADSHNLTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAQFWRLYKENKSLCALVMKTAVGVVYLLACLLEPFIPSFTLEVFKQLNLPAEIHVSLCDDKGDVDRVKRLWDIVSSGHKLGTPKPLFKELKDEEVDFYRKKFAGSQADRIVRAEVEADKVAEQLKKTKVSDGNGKKKPAKSSNEAKNKAAPEPDITITRLDIRVGLITKAQKHPDADALYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNDDHSKVELVEPPSSATVGERITFPGNEGNPDELLNPKKKVWETLQVDLHTNEDLVACYKDVPLTTSAGVCKVSSISCGTIK*	804

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu11g0213	803	Hamap	Methionine--tRNA ligase [metG].	16	586	IPR023458	GO:0004825
Pvu11g0213	803	MobiDBLite	consensus disorder prediction	611	637	-	-
Pvu11g0213	803	Pfam	tRNA synthetases class I (M)	18	412	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Pvu11g0213	803	Pfam	Anticodon binding domain of methionyl tRNA ligase	441	591	IPR041872	-
Pvu11g0213	803	CDD	MetRS_core	17	387	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	ProSiteProfiles	tRNA-binding domain profile.	641	744	IPR002547	GO:0000049
Pvu11g0213	803	Pfam	Putative tRNA binding domain	647	741	IPR002547	GO:0000049
Pvu11g0213	803	TIGRFAM	metG: methionine--tRNA ligase	18	539	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Pvu11g0213	803	PANTHER	METHIONINE--TRNA LIGASE	5	803	IPR023458	GO:0004825
Pvu11g0213	803	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	153	189	IPR029038	-
Pvu11g0213	803	Gene3D	-	401	574	-	-
Pvu11g0213	803	SUPERFAMILY	Nucleotidylyl transferase	15	399	-	-
Pvu11g0213	803	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	5	803	-	-
Pvu11g0213	803	SUPERFAMILY	Nucleic acid-binding proteins	643	787	IPR012340	-
Pvu11g0213	803	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	404	588	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Pvu11g0213	803	MobiDBLite	consensus disorder prediction	611	628	-	-
Pvu11g0213	803	CDD	Anticodon_Ia_Met	396	532	IPR041872	-
Pvu11g0213	803	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	25	36	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Pvu11g0213	803	PRINTS	Methionyl-tRNA synthetase signature	20	33	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	PRINTS	Methionyl-tRNA synthetase signature	53	67	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	PRINTS	Methionyl-tRNA synthetase signature	101	112	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	PRINTS	Methionyl-tRNA synthetase signature	269	280	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	PRINTS	Methionyl-tRNA synthetase signature	304	319	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	PRINTS	Methionyl-tRNA synthetase signature	399	410	IPR033911	GO:0004825\|GO:0006431
Pvu11g0213	803	Gene3D	-	153	189	IPR029038	-
Pvu11g0213	803	Gene3D	-	640	803	IPR012340	-
Pvu11g0213	803	CDD	tRNA_bind_EMAP-II_like	640	744	-	-
Pvu11g0213	803	Gene3D	HUPs	17	400	IPR014729	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu11g0213	Pvu-Chr11	1628963	1636130	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu11g0213	K01874		-	gmx:100809861	1528.84