Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0203 ATGAGTGACAATTTGAAGGGAAGAGTCAACGCTCTGGGGGAGCGTCTCAAAATTGGTGGAGCTGAGGTGGGTCGGAAGATGAGTGCTGGAATGAGTTCTGTGAGCTTCAAAGTGAAAGAGTTTTTCCAGGATTCAAGCCATGCTGATAAACTCGTTGGAGAAGCTACCTCTGAGGCCCTTCATCACCCTCACTGGCCCATCATTCTTCATCTCTGTGACTTGATCAATGGTGACCAACTCAACACTGCTGAAGTGGTGCGTGCAATAAAGAAAAGGGTTGTTTCCAAGAGTCCTAGAAGTCAGTATCTGGCTCTGGTTCTGCTTGAAGCATTGGTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCAACTGAGAGAGTCCTTGAAGAGATGGTCAAGCTCGTTGATGACCCTTATGCTTTTGTTAATAACAGGAATAAGGCTTTGATGATGATTGAGGCATGGGGAGAGTCAACCACTGAACTTCGCTACCTGCCTGTCTATGCACAAACTTACAAGAGTTTGAAATCAAGGGGTGTTCGATTCCCTGGTCGTGACAACGAAAGCTTGGCTCCTATTTTCACTCCACCTCGTTCTGGCACTACTCCAGAGGCAGTTGTCAATCATGAACATCTTATGCAGCATGACATTGATGTGCAAAGTTTTTCGCCTGTTACTCCTCCTTCTGCCCCTACTTCAGAGGCTGATGTCAGTCTTGCAGCTCTTATGCAGCATGATGTTCGTGTGAAAAGTTTTACGTCTCAACAAGCAAAGGAAGCTTTTGATGTTGCGAGAAATAGCTTTGAGCTTCTTTCTACCGTGTTATCTTCTTCAATGCAGCAGGATGTTTTAAAGGATGATTTGATTACCACATTAGTAAAACAGTGCCGTGAGTCCCAGGCTACTGTCCATAGAATCATTGAGACTTCTTGGGATAATGAAGCACTGCTATGTGAGGCCTTGAATATAAATGATGAGATTCAGAAGGTTGTCTCCAGATATGAAGAAATGAAGAAGAAGAAGAAGCATAGAGTTGTTCCACCTGAACCTGAAGTGGGTATGGCACCTATTGCCATAGAAGCTGATGAGTCCCCCCATTTTAAAGAAGAGGAAGCCCTGGTTAGAAAGAGTGGAGGTTCAAGAACTGGAGTCCAGGGAGGGAGCCAGGATGAGATGTTGGATGATCTTGATGAGATGATATTTGGGAAAAAGGTTAGGGATGGCTTTGATCCAAAGAAACAACAATCATCTGAAGATCATCTCATCTCCTTCTAA 1275 0.4455 MSDNLKGRVNALGERLKIGGAEVGRKMSAGMSSVSFKVKEFFQDSSHADKLVGEATSEALHHPHWPIILHLCDLINGDQLNTAEVVRAIKKRVVSKSPRSQYLALVLLEALVKNCDKAFLEVATERVLEEMVKLVDDPYAFVNNRNKALMMIEAWGESTTELRYLPVYAQTYKSLKSRGVRFPGRDNESLAPIFTPPRSGTTPEAVVNHEHLMQHDIDVQSFSPVTPPSAPTSEADVSLAALMQHDVRVKSFTSQQAKEAFDVARNSFELLSTVLSSSMQQDVLKDDLITTLVKQCRESQATVHRIIETSWDNEALLCEALNINDEIQKVVSRYEEMKKKKKHRVVPPEPEVGMAPIAIEADESPHFKEEEALVRKSGGSRTGVQGGSQDEMLDDLDEMIFGKKVRDGFDPKKQQSSEDHLISF* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0203 424 MobiDBLite consensus disorder prediction 369 392 - -
Pvu11g0203 424 PANTHER TOM1-LIKE PROTEIN 1 226 424 - -
Pvu11g0203 424 PANTHER TOM1-LIKE PROTEIN 1 1 223 - -
Pvu11g0203 424 Pfam GAT domain 265 339 IPR004152 GO:0035091|GO:0043130
Pvu11g0203 424 ProSiteProfiles GAT domain profile. 252 339 IPR004152 GO:0035091|GO:0043130
Pvu11g0203 424 SUPERFAMILY ENTH/VHS domain 44 183 IPR008942 -
Pvu11g0203 424 PANTHER TOM1-LIKE PROTEIN 1 226 424 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pvu11g0203 424 PANTHER TOM1-LIKE PROTEIN 1 1 223 IPR044836 GO:0035091|GO:0043130|GO:0043328
Pvu11g0203 424 Gene3D - 39 200 IPR008942 -
Pvu11g0203 424 CDD VHS 48 177 - -
Pvu11g0203 424 PIRSF TOM1 32 421 IPR014645 -
Pvu11g0203 424 SUPERFAMILY GAT-like domain 181 340 - -
Pvu11g0203 424 MobiDBLite consensus disorder prediction 405 424 - -
Pvu11g0203 424 ProSiteProfiles VHS domain profile. 55 183 IPR002014 GO:0035091|GO:0043130
Pvu11g0203 424 Gene3D - 249 346 IPR038425 -
Pvu11g0203 424 Pfam VHS domain 46 179 IPR002014 GO:0035091|GO:0043130
Pvu11g0203 424 SMART VHS_2 48 179 IPR002014 GO:0035091|GO:0043130
Pvu11g0203 424 Coils Coil 320 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0203 Pvu-Chr11 1566776 1569233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0203 - - ccaj:109799203 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0203 11 1566776 1569233 Pvu11g0203 11 1566776 1569233 ECH