Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g0181 ATGTTTGAGATGGGAGTTGCTGGATTTGAAGTTAATAGGAGTTATGCTTCTGCTTCTGTTTTGCATTTTGGTGCCAATTCGTTATCTTCATACACGGTGCCCATTTCTCTGAGACCCTTTTTTGGGAATGCTTTGAACGCGAGGTTTTTAGGGAAGATTCGGGTTTCTCACACCCGGAAGGTGAATTTTGGTGCTGTCACTGCTTCACTGAATGATGGCTCTAATGTTGGGTTGATCAGTGATGCGGTTCTTCCGAAAGACTCAGAGTTCAAGCCTTCATTTGATGAATATTTGAAGGCTATGGAATCTGCCAGAACTGTGAGGGATACGAAGCGTGCTGCCACTACTAGAAAAAAGAAGATGCCGGAAAAGGGTGATAGCACCAAAAAATTTAGCAGTGGAAGAGTGAAAATTGAGAGAAAAGATGGGGTTGAAGATGGTAAAGAAGGTTCCTCCAGAAGTAGCGGCAAATTCAGAAGATCATTTAGAAGTGAAAACGACCTTGATGTAAAGGCAAAGCAGAAAAATGGGTTGTTGAAACGCCAGAGTCATAGTTTAGAACCAGAATCTAGGAGTGTAGTAAGGTCTAGTTTGAATGGTAGCCATGGGAGTGTCATGAAGAGGGGGGTTATTCATGATTTGTATTCTTCAAAGATGATGGGAGAGAAGAATTTTGGTAGCAGACAAAGGGAATACAACACACAAGGTAAAATCCCTGATAGAGATAAAATTGCAGTAAAACAAAATGTTCAGGACAGAGGGATTGTAAGAAGACACAGTGAGAATGGAAGTTTTATAAATAGAAATGGTTTGTCTAATGTCAAAATGAATGGAAGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGACAATTCGGAGGTGTTTAGAGCAGCATTTGAGAATCTGGATGACCCGAACAAGGTTATCAGAAAGACACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATGCGTTAAATGGTGCAGATATCAATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATAACAAGGATTATCACAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAGGTGATTGAATGGCTTCAAAAGCGTGAACGTTTTGAGTCCCATAAGCTAAGGAATATATATACTTCTGCTCTTGATGCACTTGGAAAGTCCAGGAGACCTGTAGAGGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCGTATCCTGATTTAGTAGCTTATCGGAGTATTGCTGTGACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTGATTGATACTATGCGATCACCACCTAAGAAAAAGTTCAAAACAGGGGTATTTGAGAGCTGGGACCCAAGGCTGGAACCAGATTCTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAAGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAGGACAACAACCTTCTGCGACAACTTACGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCATTCCCAATTCATTGACATATAGAGTTCTTGTAAATACACTATCGAAAGAGGGAAAAACTGATGAGGCTATATTGGCTGTCCAAGAAATGGAAAATCGTGGAATTGTAGGTTCGGCTTCTCTTTATTATGATCTAGCTCGATGCCTCTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAATATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAATCTGGTTACTTATAACATCTTGCTGAAAGTTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGCTGTTTGAGCAGATGTCAGAAAATGCAAATTCTCTGAGGGGAAATACTGATTACAAGATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGACCATGTCTATCAAATGATGTTGTACCATGGTTACCATTTCAATCAAAAACGTCATCTTCAAATGATATTGGAGGCTTCAAGAGCAGGAAAGGAACGGCCTTTGGAGATAACATGGAAACACTTAACCGACATGGATCGAACTCCACCAACTTCTCTGATCAAGGAGAGGTTTTGTTCTAAGCTTGAAAAAGAAGACTATGTTGCTGCCCTCACATGTATGACCAACAATCTCCCAACAGACTCACAGCCATTTTCCAAATCATCTTGGTTGAAACTATTGAAAATGAATTCTCACCGGTTTCAGAAGGATACCATTGTTGGATTGATGAACGAAGCCAGCAAAATAGTTTCCCATAGTAGTTTACCAAATGCAACACTTGAGTATTTAATACAATCATGTAAAAAAATTCTTTCTGCCACTGACATCAGTGAAGCTGACATGGATTCAGTGAAAAATGTTCTTGAAGTTGAAGTAGAGAATAAGCTGGTAATAGCCAACTCTAGATGA 2667 0.4008 MFEMGVAGFEVNRSYASASVLHFGANSLSSYTVPISLRPFFGNALNARFLGKIRVSHTRKVNFGAVTASLNDGSNVGLISDAVLPKDSEFKPSFDEYLKAMESARTVRDTKRAATTRKKKMPEKGDSTKKFSSGRVKIERKDGVEDGKEGSSRSSGKFRRSFRSENDLDVKAKQKNGLLKRQSHSLEPESRSVVRSSLNGSHGSVMKRGVIHDLYSSKMMGEKNFGSRQREYNTQGKIPDRDKIAVKQNVQDRGIVRRHSENGSFINRNGLSNVKMNGSRKRFIDRGYDSDNSEVFRAAFENLDDPNKVIRKTQFSHKEMEEKIQKLANALNGADINLPEWIFSKMIRSARLKFSDYSITRIITILGKLGNWRRVIQVIEWLQKRERFESHKLRNIYTSALDALGKSRRPVEALNIFHAMQQQMSSYPDLVAYRSIAVTLGQAGHMKELFDVIDTMRSPPKKKFKTGVFESWDPRLEPDSVVYHAVLNACVKQKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSFIPNSLTYRVLVNTLSKEGKTDEAILAVQEMENRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCAPNLVTYNILLKVYLEHGMFQEAKALFEQMSENANSLRGNTDYKMLVVPDTYTFNTMLDACVSEQRWDYFDHVYQMMLYHGYHFNQKRHLQMILEASRAGKERPLEITWKHLTDMDRTPPTSLIKERFCSKLEKEDYVAALTCMTNNLPTDSQPFSKSSWLKLLKMNSHRFQKDTIVGLMNEASKIVSHSSLPNATLEYLIQSCKKILSATDISEADMDSVKNVLEVEVENKLVIANSR* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g0181 888 PANTHER OS01G0674700 PROTEIN 35 865 IPR044645 GO:0009658
Pvu11g0181 888 Coils Coil 310 337 - -
Pvu11g0181 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 733 IPR002885 -
Pvu11g0181 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Pvu11g0181 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 652 686 IPR002885 -
Pvu11g0181 888 TIGRFAM PPR: pentatricopeptide repeat domain 551 582 IPR002885 -
Pvu11g0181 888 TIGRFAM PPR: pentatricopeptide repeat domain 654 682 IPR002885 -
Pvu11g0181 888 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Pvu11g0181 888 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Pvu11g0181 888 MobiDBLite consensus disorder prediction 105 201 - -
Pvu11g0181 888 Gene3D Tetratricopeptide repeat domain 544 608 IPR011990 GO:0005515
Pvu11g0181 888 Pfam Pentatricopeptide repeat domain 617 663 IPR002885 -
Pvu11g0181 888 Pfam PPR repeat 701 730 IPR002885 -
Pvu11g0181 888 Pfam PPR repeat 551 580 IPR002885 -
Pvu11g0181 888 Pfam PPR repeat 397 422 IPR002885 -
Pvu11g0181 888 Gene3D Tetratricopeptide repeat domain 328 543 IPR011990 GO:0005515
Pvu11g0181 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Pvu11g0181 888 Pfam PPR repeat family 478 522 IPR002885 -
Pvu11g0181 888 PANTHER OS01G0674700 PROTEIN 35 865 - -
Pvu11g0181 888 SUPERFAMILY TPR-like 467 681 IPR011990 GO:0005515
Pvu11g0181 888 Gene3D Tetratricopeptide repeat domain 609 784 IPR011990 GO:0005515
Pvu11g0181 888 MobiDBLite consensus disorder prediction 119 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g0181 Pvu-Chr11 1384389 1393300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu11g0181 499 749 Glycosyltransferase AT1G05670 20.392 2.83e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g0181 - - gmx:100787028 1325.84