Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu11g0171 | ATGGCTGTTGAGACTTCCGATAAACCAAATTTACCTCATGATTTTGACGACGATGATGATGCACCCATAATATACAAAAGGTTATCAGCTAAGAAAAATCAATCACTTCCAGAAGCACCAAATTTACCTCATGATTTTGACGATGATGATGATGCACCCATAATTTACAAAAGGTTATCAGCTAAGAAAAATCAATCACTTTCAGAAGCAAGGAAGTCAAGTTCTCACATTCATGAGGGACAGTCATATAGACAGATTCCTAATGCATCTTCTTCGAATGGCCAAACTTCTAGCATGCAGAAAGGTAATACTGCCCCATCTCTTAAGCCATCAGCCATGAAGCCTTCTGTAGGTATCTCAAGAGCTCCAAATTCTGTTGGCAACACCTCCTCTGTGAAGTTTCCTGTAGCAAATTCAAAATCACCTTCATTGGCAGATAAGCAGAAAATGTTCATTGACGTCAAGGTGGAACCAAAATCTACTGTACACAGTGGTAAAGATTTCTGTGAAGATTCTGAAGATGATGAGGATAATAAACCGTTGAGTTTTAGGCTGAAGAATTCTAACCATGATAACAAGGTGACGTCTGTCGTCAAGAAATCTTATGAAGACTCTGATGGTGATGATGATGTCCCTTTGTCAAAAAAGTTACCTCGTAATTTCAATTTGGGAACAAGTAGCAGTAACCATGACGACTCTGATAAGAAGCCTATTTCTAAAATTCAGAAAGAGCGGCAAAATGGTTCTGGCATGAGTAATAAACAGGACAGGCCATCTCTATTGCCAGCTAAAAGACCACTAGATAATAGTAATTCCTTGCACCCTTCTGTTAAGAAGCCTAAGGTCTCAGGCTCAGATGCATCTATCAAAACCAAGCCAGGCTTTCAGAAACGTGAGCTGAAGCTAGAGGATGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAACAAACCGTGTCAGGTGATAAATCATCTTCCATGAAGAAGGTGATTACAAAGGTTGCTAAAGTTAACAAGTCTAGCTCAAAATCTTTCAAGAAACAGACCAAGAAGCCAGTTAAAAAATCAGGCAGTGGTTCAGAATATTCCAAATCTAGCAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCCCCTCCTTACCAGCGGCATGGTGTAAAGATGCTCTATAAGGGAAGACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACTGAGTACATGCAGAAAGATAAGTTCAAGGATAATTTCTGGTCTGACTGGCGAAAGTTGCTTGGAAGAAATCATGTTATCCAGAACTTGAAAGACTGTGATTTCACTCCAATATATGACTGGTACCAAAGTGAGAAGGAAAAGAAGAAGCAAATGACCACCGATGAGAAGAAAACTGTGAAGGAAGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGGGGAGAGCACCCCAAGATGGGAAAATTGAAAAAACGCATTCATCCAGGTGACATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACCTGGTTAGCCTATTGGAGTGACCCTATAAATCCAAAGTTATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGATTATATAGAGAACATTAGGTCTGCATACACAAAAGATTTTACCAATAAAGATATTACTAAGCTGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGACGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGATAAGAGAACCTCCCAACAAACTCAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTATATAATGCAATCTTGAAGTTACAAAAAGATAAACGTCCTGGTGATGATCTTTTTGATAAGCTGGATACAAGTAAATTGAATGCTCATCTAAAGGAACTCATGCCTGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCAATCACATTGGATAATATGTTAAACAAAGGAACTAAAGACGGAGATGTTGGGGAGAAAATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCTATCATTTGCAATCATCAACGTAGTGTTTCAAAATCTCATGATGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGGAAGCCTCCTTCAAAGAGTTCAGATGGAAAGACAAAAAAGAACTTGACTCCTGAAGTACTAGAGAAAAAGATATCTCAAACCAATGCAAAAATCGAGAAGATGCAACGTGATATGAAGACAAAAGAAGATTTAAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCTTGGTGCAAGCGGCATGAGGTTCCTATCGAAAAGATTTTCAACAAATCTCTGCTGGCAAAATTCTGTTGGGCAATGGATGTGGATCCTGACTTCAGATTCTGA | 2775 | 0.3899 | MAVETSDKPNLPHDFDDDDDAPIIYKRLSAKKNQSLPEAPNLPHDFDDDDDAPIIYKRLSAKKNQSLSEARKSSSHIHEGQSYRQIPNASSSNGQTSSMQKGNTAPSLKPSAMKPSVGISRAPNSVGNTSSVKFPVANSKSPSLADKQKMFIDVKVEPKSTVHSGKDFCEDSEDDEDNKPLSFRLKNSNHDNKVTSVVKKSYEDSDGDDDVPLSKKLPRNFNLGTSSSNHDDSDKKPISKIQKERQNGSGMSNKQDRPSLLPAKRPLDNSNSLHPSVKKPKVSGSDASIKTKPGFQKRELKLEDDDDDDDIPISQRIKKQTVSGDKSSSMKKVITKVAKVNKSSSKSFKKQTKKPVKKSGSGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQRHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKDNFWSDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKEKKKQMTTDEKKTVKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPGDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRSAYTKDFTNKDITKLQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKLQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDNMLNKGTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMSKLTEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKTKKNLTPEVLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF* | 925 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 42 | 57 | - | - | |
| Pvu11g0171 | 924 | PANTHER | DNA TOPOISOMERASE I | 169 | 924 | - | - | |
| Pvu11g0171 | 924 | SUPERFAMILY | DNA breaking-rejoining enzymes | 595 | 921 | IPR011010 | GO:0003677 | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 79 | 110 | - | - | |
| Pvu11g0171 | 924 | CDD | Topoisomer_IB_N | 381 | 593 | - | - | |
| Pvu11g0171 | 924 | Gene3D | - | 744 | 924 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Pvu11g0171 | 924 | SMART | topeu | 521 | 897 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Pvu11g0171 | 924 | Coils | Coil | 851 | 871 | - | - | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
| Pvu11g0171 | 924 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 381 | 592 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 820 | 843 | - | - | |
| Pvu11g0171 | 924 | Gene3D | Topoisomerase I; Chain A, domain 3 | 595 | 743 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 870 | 888 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 376 | 593 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Pvu11g0171 | 924 | Pfam | C-terminal topoisomerase domain | 856 | 924 | IPR025834 | - | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 121 | 145 | - | - | |
| Pvu11g0171 | 924 | PANTHER | DNA TOPOISOMERASE I | 169 | 924 | - | - | |
| Pvu11g0171 | 924 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 595 | 820 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 316 | 330 | - | - | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 358 | 378 | - | - | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 196 | 215 | - | - | |
| Pvu11g0171 | 924 | PRINTS | Eukaryotic DNA topoisomerase I signature | 521 | 530 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | PRINTS | Eukaryotic DNA topoisomerase I signature | 637 | 656 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | PRINTS | Eukaryotic DNA topoisomerase I signature | 660 | 674 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | PRINTS | Eukaryotic DNA topoisomerase I signature | 682 | 698 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | PRINTS | Eukaryotic DNA topoisomerase I signature | 740 | 754 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | PRINTS | Eukaryotic DNA topoisomerase I signature | 877 | 888 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | Coils | Coil | 793 | 827 | - | - | |
| Pvu11g0171 | 924 | Coils | Coil | 478 | 498 | - | - | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 1 | 378 | - | - | |
| Pvu11g0171 | 924 | Gene3D | - | 397 | 480 | IPR013034 | GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | CDD | Topo_IB_C | 601 | 794 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Pvu11g0171 | 924 | MobiDBLite | consensus disorder prediction | 150 | 169 | - | - | |
| Pvu11g0171 | 924 | Gene3D | DNA Topoisomerase I, domain 2 | 377 | 592 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu11g0171 | K03163 | - | gmx:100799837 | 1469.14 |